#!/bin/sh -e

pkg=vsearch
if [ "$ADTTMP" = "" ] ; then
  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
cd $ADTTMP
mkdir -p data
cd data
tar xaf /usr/share/doc/${pkg}/examples/simm.tar.gz
cp -a /usr/share/doc/${pkg}/examples/[A-Z]* .
cd ..
cp -a /usr/share/doc/${pkg}/tests/eval .
cp -a /usr/share/doc/${pkg}/tests/test .
find . -type f -name "*.xz" -exec unxz \{\} \;
cd data && bunzip2 --keep BioMarKs.fsa.bz2 && gzip --keep --rsyncable BioMarKs.fsa && \
           bunzip2 --keep PR2-18S-rRNA-V4.fsa.bz2 && gzip --keep --rsyncable PR2-18S-rRNA-V4.fsa
cd ../test
for t in *.sh ; do \
    bash $t v ; \
done

rm -f $ADTTMP/*
