#!/bin/bash
set -e

pkg=sibelia

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP
gunzip -r *

set -x
cd C-Sibelia/Staphylococcus_aureus
C-Sibelia.py NCTC8325.fasta RN4220.fasta

cd $AUTOPKGTEST_TMP/Sibelia/Helicobacter_pylori
Sibelia -s loose Helicobacter_pylori.fasta
