#!/bin/bash
set -e

pkg=seqkit

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -Rf /usr/share/doc/${pkg}-examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"
gunzip -r *
cd tests
sed -i '/bundler_stats_merged/d' test.sh
sed -i '/csvtk/d' test.sh
sed -i '/CSVTK/d' test.sh
sed -i 's/app=.*/app=seqkit/g' test.sh
sed -i '/corr.*tsv/d' test.sh
sed -i '/cd seqkit/d' test.sh
cd ..
bash ./tests/test.sh
