
Amino acid sequence Maximum Likelihood method, version 3.7a

 5 species,  13  sites
Jones-Taylor-Thornton model of amino acid change


Name            Sequences
----            ---------

Alpha        AACGTGGCCA AAT
Beta         ..G..C.... ..C
Gamma        C.TT.C.T.. C.A
Delta        GGTA.TT.GG CC.
Epsilon      GGGA.CT.GG CCC



  +Beta      
  |  
  |                                     +Epsilon   
  |      +------------------------------2  
  4------3                              +------------Delta     
  |      |  
  |      +--------------------Gamma     
  |  
  +---------Alpha     


remember: this is an unrooted tree!

Ln Likelihood =  -131.55052

 Between        And            Length      Approx. Confidence Limits
 -------        ---            ------      ------- ---------- ------

     4          Alpha             0.31006     (     zero,     0.66806) **
     4          Beta              0.00010     (     zero,    infinity)
     4             3              0.22206     (     zero,     0.62979) *
     3             2              1.00907     (  0.13965,     1.87849) **
     2          Epsilon           0.00010     (     zero,    infinity)
     2          Delta             0.41175     (     zero,     0.86684) **
     3          Gamma             0.68569     (  0.01628,     1.35510) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01


Probable sequences at interior nodes:

  node       Reconstructed sequence (caps if > 0.95)

    4        AAGGTCGCCA AAC
 Beta        AAGGTCGCCA AAC
    3        aAGgTCGCCA CAC
    2        GGGATCTCGG CCC
 Epsilon     GGGATCTCGG CCC
 Delta       GGTATTTCGG CCT
 Gamma       CATTTCGTCA CAA
 Alpha       AACGTGGCCA AAT

