Spec
ArrayGapsStores length of gap- and non-gap runs in an array.
Stores length of gap- and non-gap runs in an array.
| Extends | Gaps |
|---|---|
| All Extended | Gaps |
| All Impl'd | AssignableConcept, ContainerConcept, DestructibleConcept |
| Defined in | <seqan/align.h> |
| Signature |
template <typename TSequence>
class Gaps<TSequence, ArrayGaps>
|
Template Parameters
TSequence |
The type of the underling sequence. |
|---|
Member Function Overview
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Gaps::Gaps([other]);, Gaps::Gaps(seq);Constructor.
Member Functions Inherited From AssignableConcept
Interface Function Overview
Interface Functions Inherited From Gaps
assignSourcebeginPositionclearClippingclearGapsclippedBeginPositionclippedEndPositionclipSemiGlobalcopyClippingcopyGapscountCharacterscountGapExtensionscountGapOpenscountGapscountLeadingGapscountTrailingGapsendPositioninsertGapinsertGapsisCharacerisGapiterlengthremoveGapremoveGapssetBeginPositionsetClippedBeginPositionsetClippedEndPositionsetEndPositionsourcetoSourcePositiontoViewPositionunclippedLength
Interface Functions Inherited From AssignableConcept
Interface Functions Inherited From ContainerConcept
Interface Metafunction Overview
Interface Metafunctions Inherited From ContainerConcept
Member Functions Detail
Gaps::Gaps([other]);
Gaps::Gaps(seq);
Constructor.
Parameters
other
|
Other Gaps object to copy from. |
|---|---|
seq
|
Sequence concept to construct the gaps for. |
Data Races
If not stated otherwise, concurrent invocation is not guaranteed to be thread-safe.