Typedef Pam120PAM120 scoring matrix.
PAM120 scoring matrix.
| Defined in | <seqan/score.h> |
|---|---|
| Signature |
typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam120> > Pam120;
|
Overview
A 3
B 0 4
C -3 -6 9
D 0 4 -7 5
E 0 3 -7 3 5
F -4 -5 -6 -7 -7 8
G 1 0 -4 0 -1 -5 5
H -3 1 -4 0 -1 -3 -4 7
I -1 -3 -3 -3 -3 0 -4 -4 6
J -2 -4 -5 -4 -4 0 -5 -4 4 4
K -2 0 -7 -1 -1 -7 -3 -2 -3 -4 5
L -3 -4 -7 -5 -4 0 -5 -3 1 3 -4 5
M -2 -4 -6 -4 -3 -1 -4 -4 1 2 0 3 8
N -1 3 -5 2 1 -4 0 2 -2 -3 1 -4 -3 4
O -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -1
P 1 -2 -4 -3 -2 -5 -2 -1 -3 -3 -2 -3 -3 -2 -2 6
Q -1 0 -7 1 2 -6 -3 3 -3 -3 0 -2 -1 0 -1 0 6
R -3 -2 -4 -3 -3 -5 -4 1 -2 -3 2 -4 -1 -1 -2 -1 1 6
S 1 0 0 0 -1 -3 1 -2 -2 -3 -1 -4 -2 1 -1 1 -2 -1 3
T 1 0 -3 -1 -2 -4 -1 -3 0 -2 -1 -3 -1 0 -1 -1 -2 -2 2 4
U -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -2 -2 -1 -2 -1 -1 -2
V 0 -3 -3 -3 -3 -3 -2 -3 3 2 -4 1 1 -3 -1 -2 -3 -3 -2 0 -1 5
W -7 -6 -8 -8 -8 -1 -8 -3 -6 -5 -5 -3 -6 -4 -5 -7 -6 1 -2 -6 -5 -8 12
Y -4 -3 -1 -5 -5 4 -6 -1 -2 -2 -5 -2 -4 -2 -3 -6 -5 -5 -3 -3 -3 -3 -2 8
Z -1 2 -7 3 4 -6 -2 1 -3 -3 -1 -3 -2 0 -1 -1 4 -1 -1 -2 -1 -3 -7 -5 4
X -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -2 -2 -1 -2 -1 -1 -2 -1 -5 -3 -1 -2
* -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 1
A B C D E F G H I J K L M N O P Q R S T U V W Y Z X *