Foundation of vector-like and list-like containers in Bioconductor

---

Documentation for package ‘S4Vectors’ version 0.42.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

A B C D E F G H I L M N O P Q R S T U V W X Z misc

-- A --

active	Collection of Filter Rules
active-method	Collection of Filter Rules
active<-	Collection of Filter Rules
active<--method	Collection of Filter Rules
aggregate	Compute summary statistics of subsets of vector-like objects
aggregate-method	Compute summary statistics of subsets of vector-like objects
aggregate-methods	Compute summary statistics of subsets of vector-like objects
aggregate.Vector	Compute summary statistics of subsets of vector-like objects
Annotated	Annotated class
Annotated-class	Annotated class
anyDuplicated-method	Rle objects
anyDuplicated-method	Compare, order, tabulate vector-like objects
anyDuplicated-method	Subsetting utilities
anyDuplicated.NSBS	Subsetting utilities
anyDuplicated.Rle	Rle objects
anyDuplicated.Vector	Compare, order, tabulate vector-like objects
anyNA-method	Rle objects
anyNA-method	Vector objects
append	Vector objects
append-method	Rle objects
append-method	Vector objects
as.character-method	Factor objects
as.character-method	LLint vectors
as.character-method	Vector objects
as.character.LLint	LLint vectors
as.complex-method	Vector objects
as.data.frame-method	DataFrame objects
as.data.frame-method	Hits objects
as.data.frame-method	List objects
as.data.frame-method	Pairs objects
as.data.frame-method	Rle objects
as.data.frame-method	Vector objects
as.data.frame.DataFrame	DataFrame objects
as.data.frame.Hits	Hits objects
as.data.frame.Vector	Vector objects
as.double-method	Vector objects
as.env	Vector objects
as.env-method	SimpleList objects
as.env-method	Vector objects
as.factor-method	Factor objects
as.factor-method	Rle objects
as.integer-method	Factor objects
as.integer-method	LLint vectors
as.integer-method	Rle objects
as.integer-method	Vector objects
as.integer-method	Subsetting utilities
as.integer.LLint	LLint vectors
as.list-method	List objects
as.list-method	Rle objects
as.list-method	SimpleList objects
as.list-method	TransposedDataFrame objects
as.list-method	Vector objects
as.list.Rle	Rle objects
as.list.SimpleList	SimpleList objects
as.list.TransposedDataFrame	TransposedDataFrame objects
as.list.Vector	Vector objects
as.LLint	LLint vectors
as.logical-method	LLint vectors
as.logical-method	Vector objects
as.logical.LLint	LLint vectors
as.matrix-method	DataFrame objects
as.matrix-method	Hits objects
as.matrix-method	List of Hits objects
as.matrix-method	TransposedDataFrame objects
as.matrix-method	Vector objects
as.matrix.Vector	Vector objects
as.numeric-method	LLint vectors
as.numeric-method	Vector objects
as.numeric.LLint	LLint vectors
as.raw-method	Factor objects
as.raw-method	Vector objects
as.table-method	Hits objects
as.table-method	List of Hits objects
as.vector-method	Rle objects
as.vector.Rle	Rle objects

-- B --

bindCOLS	Combine objects along their ROWS or COLS
bindCOLS-method	TransposedDataFrame objects
bindROWS	Combine objects along their ROWS or COLS
bindROWS-method	Combine DataFrame objects along their rows or columns, or merge them
bindROWS-method	Factor objects
bindROWS-method	Hits objects
bindROWS-method	LLint vectors
bindROWS-method	Rle objects
bindROWS-method	TransposedDataFrame objects
bindROWS-method	Vector objects
bindROWS-method	Combine objects along their ROWS or COLS
breakTies	Hits objects

-- C --

c	Vector objects
c-method	Combine DataFrame objects along their rows or columns, or merge them
c-method	LLint vectors
c-method	Vector objects
cbind-method	Combine DataFrame objects along their rows or columns, or merge them
cbind-method	Matrix for Filter Results
cbind-method	Common operations on List objects
cbind-method	RectangularData objects
cbind.DataFrame	Combine DataFrame objects along their rows or columns, or merge them
cbind.List	Common operations on List objects
cbind.RectangularData	RectangularData objects
cbind_mcols_for_display	Display utilities
chartr-method	Common operations on Rle objects
class:DataFrame	DataFrame objects
class:DataFrameFactor	DataFrameFactor objects
class:DFrame	DataFrame objects
class:expression_OR_function	Collection of Filter Rules
class:Factor	Factor objects
class:FilterRules	Collection of Filter Rules
class:Hits	Hits objects
class:HitsList	List of Hits objects
class:integer_OR_LLint	LLint vectors
class:integer_OR_raw	Factor objects
class:List	List objects
class:list_OR_List	List objects
class:LLint	LLint vectors
class:NSBS	Subsetting utilities
class:Pairs	Pairs objects
class:RectangularData	RectangularData objects
class:Rle	Rle objects
class:SelfHits	Hits objects
class:SelfHitsList	List of Hits objects
class:SimpleList	SimpleList objects
class:SortedByQueryHits	Hits objects
class:SortedByQueryHitsList	List of Hits objects
class:SortedByQuerySelfHits	Hits objects
class:SortedByQuerySelfHitsList	List of Hits objects
class:TransposedDataFrame	TransposedDataFrame objects
class:Vector	Vector objects
class:vector_OR_Vector	Vector objects
classNameForDisplay	Display utilities
classNameForDisplay-method	DataFrame objects
classNameForDisplay-method	Hits objects
classNameForDisplay-method	SimpleList objects
classNameForDisplay-method	Display utilities
coerce-method	DataFrame objects
coerce-method	Factor objects
coerce-method	Collection of Filter Rules
coerce-method	Hits objects
coerce-method	List of Hits objects
coerce-method	LLint vectors
coerce-method	List objects
coerce-method	Pairs objects
coerce-method	Rle objects
coerce-method	SimpleList objects
coerce-method	TransposedDataFrame objects
coerce-method	Vector objects
colnames-method	DataFrame objects
colnames-method	TransposedDataFrame objects
colnames<--method	DataFrame objects
combineCols	RectangularData objects
combineCols-method	Combine DataFrame objects along their rows or columns, or merge them
combineRows	RectangularData objects
combineRows-method	Combine DataFrame objects along their rows or columns, or merge them
combineUniqueCols	RectangularData objects
complete.cases-method	Common operations on DataFrame objects
Complex-method	Common operations on Rle objects
coolcat	Display utilities
cor-method	Common operations on Rle objects
countLnodeHits	Hits objects
countLnodeHits-method	Hits objects
countMatches	Compare, order, tabulate vector-like objects
countMatches-method	Compare, order, tabulate vector-like objects
countQueryHits	Hits objects
countRnodeHits	Hits objects
countRnodeHits-method	Hits objects
countSubjectHits	Hits objects
cov-method	Common operations on Rle objects

-- D --

DataFrame	DataFrame objects
DataFrame-class	DataFrame objects
DataFrame-combine	Combine DataFrame objects along their rows or columns, or merge them
DataFrame-utils	Common operations on DataFrame objects
DataFrameFactor	DataFrameFactor objects
DataFrameFactor-class	DataFrameFactor objects
decode	Rle objects
decode-method	Rle objects
DFrame	DataFrame objects
DFrame-class	DataFrame objects
diff-method	Common operations on Rle objects
diff.Rle	Common operations on Rle objects
dim-method	DataFrameFactor objects
dim-method	RectangularData objects
dimnames-method	DataFrameFactor objects
dimnames-method	RectangularData objects
dimnames<--method	DataFrame objects
dimnames<--method	RectangularData objects
dimnames<--method	TransposedDataFrame objects
droplevels-method	DataFrame objects
droplevels-method	Factor objects
droplevels-method	Common operations on List objects
droplevels-method	Common operations on Rle objects
droplevels.Factor	Factor objects
droplevels.List	Common operations on List objects
droplevels.Rle	Common operations on Rle objects
duplicated-method	DataFrame comparison methods
duplicated-method	Rle objects
duplicated-method	Compare, order, tabulate vector-like objects
duplicated.DataFrame	DataFrame comparison methods
duplicated.Vector	Compare, order, tabulate vector-like objects
duplicatedIntegerPairs	Some utility functions to operate on integer vectors
duplicatedIntegerQuads	Some utility functions to operate on integer vectors

-- E --

elementMetadata	Vector objects
elementMetadata-method	Vector objects
elementMetadata<-	Vector objects
elementMetadata<--method	Vector objects
elementNROWS	List objects
elementNROWS-method	List objects
elementType	List objects
elementType-method	List objects
end-method	Rle objects
endoapply	Common operations on List objects
eval-method	Collection of Filter Rules
evalSeparately	Collection of Filter Rules
evalSeparately-method	Collection of Filter Rules
expand	Unlist the list-like columns of a DataFrame object
expand-method	Unlist the list-like columns of a DataFrame object
expand.grid	Vector objects
expand.grid-method	Vector objects
expression_OR_function	Collection of Filter Rules
expression_OR_function-class	Collection of Filter Rules
extractCOLS	Subsetting utilities
extractCOLS-method	DataFrame objects
extractCOLS-method	TransposedDataFrame objects
extractROWS	Subsetting utilities
extractROWS-method	DataFrame objects
extractROWS-method	Hits objects
extractROWS-method	Rle objects
extractROWS-method	TransposedDataFrame objects
extractROWS-method	Subsetting utilities

-- F --

Factor	Factor objects
Factor-class	Factor objects
FactorToClass	Factor objects
FactorToClass-method	Factor objects
Filter-method	Common operations on List objects
FilterMatrix	Matrix for Filter Results
FilterMatrix-class	Matrix for Filter Results
FilterRules	Collection of Filter Rules
filterRules	Matrix for Filter Results
FilterRules-class	Collection of Filter Rules
filterRules-method	Matrix for Filter Results
Find-method	Common operations on List objects
findMatches	Compare, order, tabulate vector-like objects
findMatches-method	Compare, order, tabulate vector-like objects
findRun	Rle objects
findRun-method	Rle objects
first	Pairs objects
first-method	Pairs objects
first<-	Pairs objects
first<--method	Pairs objects
from	Hits objects
from-method	Hits objects

-- G --

getListElement	Subsetting utilities
getListElement-method	DataFrame objects
getListElement-method	List objects
getListElement-method	TransposedDataFrame objects
getListElement-method	Subsetting utilities
get_showHeadLines	Display utilities
get_showTailLines	Display utilities
gsub-method	Common operations on Rle objects

-- H --

head	Vector objects
head-method	RectangularData objects
head-method	Vector objects
head.RectangularData	RectangularData objects
head.Vector	Vector objects
Hits	Hits objects
Hits-class	Hits objects
Hits-comparison	Comparing and ordering hits
Hits-setops	Set operations on Hits objects
HitsList	List of Hits objects
HitsList-class	List of Hits objects
horizontal_slot_names	RectangularData objects
horizontal_slot_names-method	DataFrame objects

-- I --

integer_OR_LLint	LLint vectors
integer_OR_LLint-class	LLint vectors
integer_OR_raw	Factor objects
integer_OR_raw-class	Factor objects
intersect-method	Rle objects
intersect-method	Set operations on vector-like objects
intersect.Vector	Set operations on vector-like objects
IQR-method	Common operations on Rle objects
is.finite-method	Rle objects
is.LLint	LLint vectors
is.na-method	Common operations on DataFrame objects
is.na-method	LLint vectors
is.na-method	Rle objects
is.na-method	Vector objects
is.unsorted-method	Rle objects
isConstant	Test if a vector-like object is sorted
isConstant-method	Test if a vector-like object is sorted
isEmpty	List objects
isEmpty-method	List objects
isRedundantHit	Hits objects
isSelfHit	Hits objects
isSequence	Some utility functions to operate on integer vectors
isSorted	Test if a vector-like object is sorted
isSorted-method	Test if a vector-like object is sorted
isStrictlySorted	Test if a vector-like object is sorted
isStrictlySorted-method	Rle objects
isStrictlySorted-method	Test if a vector-like object is sorted
isStrictlySorted-method	Subsetting utilities

-- L --

lapply-method	Common operations on List objects
lapply-method	SimpleList objects
length-method	DataFrame objects
length-method	LLint vectors
length-method	Rle objects
length-method	TransposedDataFrame objects
length-method	Vector objects
length-method	Subsetting utilities
lengths-method	Vector objects
levels	Factor objects
levels-method	Common operations on Rle objects
levels.Rle	Common operations on Rle objects
levels<-	Factor objects
levels<--method	Factor objects
levels<--method	Common operations on Rle objects
List	List objects
List-class	List objects
List-utils	Common operations on List objects
list_OR_List	List objects
list_OR_List-class	List objects
LLint	LLint vectors
LLint-class	LLint vectors

-- M --

mad-method	Common operations on Rle objects
mad.Rle	Common operations on Rle objects
makeClassinfoRowForCompactPrinting	Display utilities
makeNakedCharacterMatrixForDisplay	Display utilities
makeNakedCharacterMatrixForDisplay-method	DataFrame objects
makeNakedCharacterMatrixForDisplay-method	Hits objects
makeNakedCharacterMatrixForDisplay-method	Pairs objects
makeNakedCharacterMatrixForDisplay-method	TransposedDataFrame objects
makeNakedCharacterMatrixForDisplay-method	Display utilities
makePrettyMatrixForCompactPrinting	Display utilities
make_zero_col_DFrame	DataFrame objects
Map-method	Common operations on List objects
match	Compare, order, tabulate vector-like objects
match-method	DataFrame comparison methods
match-method	Factor objects
match-method	Comparing and ordering hits
match-method	Pairs objects
match-method	Rle objects
match-method	Compare, order, tabulate vector-like objects
matchIntegerPairs	Some utility functions to operate on integer vectors
matchIntegerQuads	Some utility functions to operate on integer vectors
Math-method	Common operations on Rle objects
Math2-method	Common operations on Rle objects
max-method	Subsetting utilities
mcols	Vector objects
mcols-method	Vector objects
mcols<-	Vector objects
mcols<--method	Vector objects
mean-method	Common operations on Rle objects
mean.Rle	Common operations on Rle objects
median-method	Common operations on Rle objects
median.Rle	Common operations on Rle objects
mendoapply	Common operations on List objects
merge	Merge vector-like objects
merge-method	Combine DataFrame objects along their rows or columns, or merge them
merge-method	Merge vector-like objects
mergeROWS	Subsetting utilities
mergeROWS-method	DataFrame objects
mergeROWS-method	Vector objects
mergeROWS-method	Subsetting utilities
metadata	Annotated class
metadata-method	Annotated class
metadata<-	Annotated class
metadata<--method	Annotated class
mstack	Stack objects
mstack-method	Stack objects

-- N --

na.exclude-method	Common operations on DataFrame objects
na.omit-method	Common operations on DataFrame objects
names-method	DataFrame objects
names-method	Factor objects
names-method	Pairs objects
names-method	SimpleList objects
names-method	TransposedDataFrame objects
names<--method	Factor objects
names<--method	Pairs objects
names<--method	SimpleList objects
names<--method	TransposedDataFrame objects
NA_LLint_	LLint vectors
nchar-method	Common operations on Rle objects
ncol-method	DataFrame objects
ncol-method	TransposedDataFrame objects
nlevels	Factor objects
nlevels-method	Factor objects
nLnode	Hits objects
nLnode-method	Hits objects
nnode	Hits objects
nnode-method	Hits objects
normalizeDoubleBracketSubscript	Subsetting utilities
normalizeSingleBracketReplacementValue	Subsetting utilities
normalizeSingleBracketReplacementValue-method	TransposedDataFrame objects
normalizeSingleBracketReplacementValue-method	Subsetting utilities
normalizeSingleBracketSubscript	Subsetting utilities
nRnode	Hits objects
nRnode-method	Hits objects
nrow-method	DataFrame objects
nrow-method	TransposedDataFrame objects
nrun	Rle objects
nrun-method	Rle objects
NSBS	Subsetting utilities
NSBS-class	Subsetting utilities
NSBS-method	Rle objects
NSBS-method	Subsetting utilities

-- O --

Ops-method	LLint vectors
Ops-method	Common operations on Rle objects
order-method	DataFrame comparison methods
order-method	Comparing and ordering hits
order-method	Pairs objects
order-method	Rle objects
orderIntegerPairs	Some utility functions to operate on integer vectors
orderIntegerQuads	Some utility functions to operate on integer vectors

-- P --

Pairs	Pairs objects
Pairs-class	Pairs objects
parallelVectorNames	Vector objects
parallelVectorNames-method	List objects
parallelVectorNames-method	Vector objects
parallel_slot_names	Vector objects
parallel_slot_names-method	Factor objects
parallel_slot_names-method	Collection of Filter Rules
parallel_slot_names-method	Hits objects
parallel_slot_names-method	Pairs objects
parallel_slot_names-method	SimpleList objects
parallel_slot_names-method	Vector objects
params	Collection of Filter Rules
params-method	Collection of Filter Rules
paste-method	Common operations on Rle objects
pc	Common operations on List objects
pcompare	Compare, order, tabulate vector-like objects
pcompare-method	DataFrame comparison methods
pcompare-method	Factor objects
pcompare-method	Comparing and ordering hits
pcompare-method	Pairs objects
pcompare-method	Compare, order, tabulate vector-like objects
pmax-method	Common operations on Rle objects
pmax.int-method	Common operations on Rle objects
pmin-method	Common operations on Rle objects
pmin.int-method	Common operations on Rle objects
Position-method	Common operations on List objects
printAtomicVectorInAGrid	Display utilities

-- Q --

quantile-method	Common operations on Rle objects
quantile.Rle	Common operations on Rle objects
queryHits	Hits objects
queryHits-method	List of Hits objects
queryLength	Hits objects

-- R --

rank-method	Rle objects
rank-method	Compare, order, tabulate vector-like objects
rbind-method	Matrix for Filter Results
rbind-method	Common operations on List objects
rbind-method	RectangularData objects
rbind.RectangularData	RectangularData objects
RectangularData	RectangularData objects
RectangularData-class	RectangularData objects
Reduce-method	Common operations on List objects
relistToClass	Divide a vector-like object into groups
relistToClass-method	Common operations on DataFrame objects
relistToClass-method	List of Hits objects
relistToClass-method	Divide a vector-like object into groups
remapHits	Hits objects
rename	Vector objects
rename-method	Vector objects
rep	Vector objects
rep-method	DataFrame objects
rep-method	Rle objects
rep-method	Vector objects
rep.int	Vector objects
rep.int-method	Rle objects
rep.int-method	Vector objects
replaceCOLS	Subsetting utilities
replaceCOLS-method	DataFrame objects
replaceROWS	Subsetting utilities
replaceROWS-method	DataFrame objects
replaceROWS-method	Rle objects
replaceROWS-method	Vector objects
replaceROWS-method	Subsetting utilities
rev	Vector objects
rev-method	Rle objects
rev-method	Vector objects
rev.Rle	Rle objects
rev.Vector	Vector objects
revElements	Common operations on List objects
revElements-method	Common operations on List objects
Rle	Rle objects
Rle-class	Rle objects
Rle-method	Rle objects
Rle-runstat	Fixed-width running window summaries
Rle-utils	Common operations on Rle objects
ROWNAMES	RectangularData objects
ROWNAMES-method	RectangularData objects
rownames-method	DataFrame objects
rownames-method	TransposedDataFrame objects
ROWNAMES<-	RectangularData objects
ROWNAMES<--method	RectangularData objects
rownames<--method	DataFrame objects
runLength	Rle objects
runLength-method	Rle objects
runLength<-	Rle objects
runLength<--method	Rle objects
runmean	Fixed-width running window summaries
runmean-method	Fixed-width running window summaries
runmed-method	Fixed-width running window summaries
runq	Fixed-width running window summaries
runq-method	Fixed-width running window summaries
runsum	Fixed-width running window summaries
runsum-method	Fixed-width running window summaries
runValue	Rle objects
runValue-method	Rle objects
runValue<-	Rle objects
runValue<--method	Rle objects
runwtsum	Fixed-width running window summaries
runwtsum-method	Fixed-width running window summaries

-- S --

safeExplode	Some utility functions to operate on strings
sameAsPreviousROW	Compare, order, tabulate vector-like objects
sameAsPreviousROW-method	DataFrame comparison methods
sameAsPreviousROW-method	Pairs objects
sameAsPreviousROW-method	Compare, order, tabulate vector-like objects
sapply-method	Common operations on List objects
sd-method	Common operations on Rle objects
second	Pairs objects
second-method	Pairs objects
second<-	Pairs objects
second<--method	Pairs objects
selectHits	Hits objects
SelfHits	Hits objects
SelfHits-class	Hits objects
SelfHitsList	List of Hits objects
SelfHitsList-class	List of Hits objects
selfmatch	Compare, order, tabulate vector-like objects
selfmatch-method	Factor objects
selfmatch-method	Compare, order, tabulate vector-like objects
selfmatchIntegerPairs	Some utility functions to operate on integer vectors
selfmatchIntegerQuads	Some utility functions to operate on integer vectors
setdiff-method	Rle objects
setdiff-method	Set operations on vector-like objects
setdiff.Vector	Set operations on vector-like objects
setequal-method	Set operations on vector-like objects
setequal.Vector	Set operations on vector-like objects
setListElement	Subsetting utilities
setListElement-method	List objects
setListElement-method	Subsetting utilities
set_showHeadLines	Display utilities
set_showTailLines	Display utilities
shiftApply	Apply a function over subsequences of 2 vector-like objects
shiftApply-method	Apply a function over subsequences of 2 vector-like objects
shiftApply-methods	Apply a function over subsequences of 2 vector-like objects
show-method	DataFrame objects
show-method	DataFrameFactor objects
show-method	Factor objects
show-method	Matrix for Filter Results
show-method	Collection of Filter Rules
show-method	Hits objects
show-method	LLint vectors
show-method	List objects
show-method	Pairs objects
show-method	Rle objects
show-method	TransposedDataFrame objects
show-method	Subsetting utilities
show-utils	Display utilities
showAsCell	Display utilities
showAsCell-method	DataFrame objects
showAsCell-method	Factor objects
showAsCell-method	LLint vectors
showAsCell-method	List objects
showAsCell-method	Display utilities
showHeadLines	Display utilities
showTailLines	Display utilities
SimpleList	SimpleList objects
SimpleList-class	SimpleList objects
smoothEnds-method	Fixed-width running window summaries
sort-method	DataFrame comparison methods
sort-method	Hits objects
sort-method	Rle objects
sort-method	Compare, order, tabulate vector-like objects
sort.DataFrame	DataFrame comparison methods
sort.Rle	Rle objects
sort.Vector	Compare, order, tabulate vector-like objects
SortedByQueryHits	Hits objects
SortedByQueryHits-class	Hits objects
SortedByQueryHitsList	List of Hits objects
SortedByQueryHitsList-class	List of Hits objects
SortedByQuerySelfHits	Hits objects
SortedByQuerySelfHits-class	Hits objects
SortedByQuerySelfHitsList	List of Hits objects
SortedByQuerySelfHitsList-class	List of Hits objects
space	List of Hits objects
space-method	List of Hits objects
split	Divide a vector-like object into groups
split-method	Divide a vector-like object into groups
splitAsList	Divide a vector-like object into groups
splitAsList-method	List of Hits objects
splitAsList-method	Divide a vector-like object into groups
stack-method	Stack objects
stack-methods	Stack objects
start-method	Rle objects
sub-method	Common operations on Rle objects
subjectHits	Hits objects
subjectHits-method	List of Hits objects
subjectLength	Hits objects
subset	Vector objects
subset-method	RectangularData objects
subset-method	Vector objects
subset.Vector	Vector objects
subsetByFilter	Collection of Filter Rules
subsetByFilter-method	Collection of Filter Rules
subsetting-utils	Subsetting utilities
substr-method	Common operations on Rle objects
substring-method	Common operations on Rle objects
Summary-method	LLint vectors
Summary-method	Common operations on Rle objects
summary-method	Matrix for Filter Results
summary-method	Collection of Filter Rules
summary-method	Hits objects
summary-method	Common operations on Rle objects
summary-method	Vector objects
summary.Hits	Hits objects
summary.Rle	Common operations on Rle objects
summary.Vector	Vector objects
svn.time	Some utility functions to operate on strings

-- T --

t-method	Hits objects
t-method	List of Hits objects
t-method	TransposedDataFrame objects
t.DataFrame	TransposedDataFrame objects
t.Hits	Hits objects
t.TransposedDataFrame	TransposedDataFrame objects
table-method	Rle objects
table-method	Compare, order, tabulate vector-like objects
tabulate-method	Rle objects
tail	Vector objects
tail-method	RectangularData objects
tail-method	Vector objects
tail.RectangularData	RectangularData objects
tail.Vector	Vector objects
to	Hits objects
to-method	Hits objects
toListOfIntegerVectors	Some utility functions to operate on integer vectors
tolower-method	Common operations on Rle objects
toupper-method	Common operations on Rle objects
transform-method	Common operations on DataFrame objects
transform-method	Vector objects
transform.DataFrame	Common operations on DataFrame objects
transform.Vector	Vector objects
TransposedDataFrame	TransposedDataFrame objects
TransposedDataFrame-class	TransposedDataFrame objects

-- U --

unfactor	Factor objects
unfactor-method	Factor objects
union-method	Set operations on Hits objects
union-method	Rle objects
union-method	Set operations on vector-like objects
union.Vector	Set operations on vector-like objects
unique-method	DataFrame comparison methods
unique-method	Rle objects
unique-method	Compare, order, tabulate vector-like objects
unique.DataFrame	DataFrame comparison methods
unique.Vector	Compare, order, tabulate vector-like objects
unlist-method	List objects
unname-method	Vector objects
unstrsplit	Some utility functions to operate on strings
unstrsplit-method	Some utility functions to operate on strings
updateObject-method	DataFrame objects
updateObject-method	Hits objects
updateObject-method	SimpleList objects
updateObject-method	Vector objects

-- V --

values	Vector objects
values-method	Vector objects
values<-	Vector objects
values<--method	Vector objects
var-method	Common operations on Rle objects
Vector	Vector objects
Vector-class	Vector objects
Vector-comparison	Compare, order, tabulate vector-like objects
Vector-merge	Merge vector-like objects
Vector-setops	Set operations on vector-like objects
vector_OR_Vector	Vector objects
vector_OR_Vector-class	Vector objects
vertical_slot_names	RectangularData objects
vertical_slot_names-method	DataFrame objects

-- W --

which-method	Common operations on Rle objects
which.max-method	Common operations on Rle objects
width-method	Rle objects
window	Vector objects
window-method	Vector objects
window.Vector	Vector objects
within-method	Common operations on List objects

-- X --

xtabs-method	Common operations on DataFrame objects
xtfrm-method	Factor objects
xtfrm-method	Rle objects
xtfrm-method	Compare, order, tabulate vector-like objects

-- Z --

zipdown	Convert between parallel vectors and lists
zipdown-method	Convert between parallel vectors and lists
zipup	Convert between parallel vectors and lists
zipup-method	Pairs objects
zipup-method	Convert between parallel vectors and lists

-- misc --

!-method	Common operations on Rle objects
!=-method	Compare, order, tabulate vector-like objects
$-method	DataFrameFactor objects
$-method	List objects
$<--method	List objects
%in%-method	Rle objects
%in%-method	Compare, order, tabulate vector-like objects
&-method	Collection of Filter Rules
<-method	Compare, order, tabulate vector-like objects
<=-method	DataFrame comparison methods
<=-method	Compare, order, tabulate vector-like objects
==-method	DataFrame comparison methods
==-method	Compare, order, tabulate vector-like objects
>-method	Compare, order, tabulate vector-like objects
>=-method	Compare, order, tabulate vector-like objects
[	Vector objects
[-method	DataFrame objects
[-method	DataFrameFactor objects
[-method	Matrix for Filter Results
[-method	Collection of Filter Rules
[-method	List objects
[-method	Rle objects
[-method	TransposedDataFrame objects
[-method	Vector objects
[<--method	DataFrame objects
[<--method	List objects
[<--method	Rle objects
[<--method	TransposedDataFrame objects
[<--method	Vector objects
[[-method	DataFrame objects
[[-method	DataFrameFactor objects
[[-method	List objects
[[<--method	DataFrame objects
[[<--method	Collection of Filter Rules
[[<--method	List objects