********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
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********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= Primary sequences shuffled preserving 2-mers
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

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COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -p 4 common/adh.s -oc results/meme31 -mod oops -protein -nmotifs 2 -objfun se -w 12 -hsfrac 0.6 -shuf 2 -nostatus 

model:  mod=          oops    nmotifs=         2    evt=           inf
objective function:           em=       Selective mHG
                              starts=   log likelihood ratio (LLR)
width:  minw=           12    maxw=           12
nsites: minsites=       33    maxsites=       33    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=        dmix    b=               0    maxiter=        50
        distance=    1e-05
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=        0.6
        searchsize=   9996    norand=         no    csites=         -1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 
L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.0095 Y 0.027 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF EDLAGKNIRVTG MEME-1	width =  12  sites =  33  llr = 446  p-value = 1.5e-004  E-value = 1.5e-004
********************************************************************************
--------------------------------------------------------------------------------
	Motif EDLAGKNIRVTG MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :1:2::22:::1
pos.-specific     C  :::::::::::1
probability       D  :4::1:::::::
matrix            E  22::1:::::::
                  F  ::1:::::::::
                  G  1::23:2:1::7
                  H  :::::1::::::
                  I  ::1::::423::
                  K  1::2151:::::
                  L  1:4::1::2:::
                  M  2:::::::::::
                  N  1:::::2:::2:
                  P  :1::2:::::::
                  Q  1::1::::::::
                  R  11:1::1:2:::
                  S  1::11:::::11
                  T  :1::11::1:6:
                  V  1:2:::23:711
                  W  ::::::::1:::
                  Y  ::2::1::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4             
(19.5 bits)      2.7          ** 
                 2.0      * * ***
                 1.3  **  *******
                 0.7 ************
                 0.0 ------------

Multilevel           XDLAGKNIRVTG
consensus             E G   VIIN 
sequence                     L   
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif EDLAGKNIRVTG MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
ENTA_ECOLI                    1  1.02e-12          . MDFSGKNVWVTG AGKGIGYATA
DHII_HUMAN                   30  8.57e-10 YYSANEEFRP EMLQGKKVIVTG ASKGIGREMA
HDHA_ECOLI                  175  1.13e-09 AASHLVRNMA FDLGEKNIRVNG IAPGAILTDA
2BHD_STREX                    2  7.81e-09          M NDLSGKTVIITG GARGLGAEAA
AP27_MOUSE                  165  8.80e-09 AMTMLTKAMA MELGPHKIRVNS VNPTVVLTDM
YINL_LISMO                    1  1.11e-08          . MTIKNKVIIITG ASSGIGKATA
HDE_CANTR                     4  1.57e-08        MSP VDFKDKVVIITG AGGGLGKYYS
3BHD_COMTE                    2  1.57e-08          T NRLQGKVALVTG GASGVGLEVV
RFBB_NEIGO                    2  2.73e-08          M QTEGKKNILVTG GAGFIGSAVV
FABI_ECOLI                    2  4.66e-08          M GFLSGKRILVTG VASKLSIAYG
FIXR_BRAJA                  205  4.66e-08 ALASLTRELA HDYAPHGIRVNA IAPGEIRTDM
DHGB_BACME                  176  5.73e-08 GMKLMTETLA LEYAPKGIRVNN IGPGAINTPI
BDH_HUMAN                    51  6.34e-08 IGRRTYASAA EPVGSKAVLVTG CDSGFGFSLA
YURA_MYXXA                  176  9.47e-08 FLSTFMESLR VDLRGTGVRVTC IYPGFVKSEL
HMTR_LEIMA                  209  9.47e-08 ALEGLTRSAA LELAPLQIRVNG VGPGLSVLVD
DHMA_FLAS1                   10  1.04e-07  TTAGVSRRP GRLAGKAAIVTG AAGGIGRATV
FVT1_HUMAN                  202  1.40e-07 AIRGLAEALQ MEVKPYNVYITV AYPPDTDTPG
BUDC_KLETE                  168  1.69e-07 AVRGLTQTAA RDLAPLGITVNG FCPGIVKTPM
BPHB_PSEPS                    1  2.45e-07          . MKLKGEAVLITG GASGLGRALV
NODG_RHIME                  168  3.84e-07 GMIGFSKSLA QEIATRNITVNC VAPGFIESAM
YRTP_BACSU                  171  5.00e-07 AVLGLTESLM QEVRKHNIRVSA LTPSTVASDM
BA72_EUBSP                  173  5.00e-07 SVIGLTHGLG REIIRKNIRVVG VAPGVVNTDM
DHB2_HUMAN                   78  5.45e-07 MYTYLSGQEL LPVDQKAVLVTG GDCGLGHALC
LIGD_PSEPA                    2  1.07e-06          M KDFQDQVAFITG GASGAGFGQA
MAS1_AGRRA                  301  2.35e-06 EWLHYARFDA EDHGTMAAWVTA AVEKFGRIDG
RIDH_KLEAE                   10  4.93e-06  MKHSVSSMN TSLSGKVAAITG AASGIGLECA
GUTD_ECOLI                  170  6.55e-06 GGVGLTQSLA LDLAEYGITVHS LMLGNLLKSP
DHB3_HUMAN                  214  7.03e-06 FVCAFSKALQ EEYKAKEVIIQV LTPYAVSTAM
PCR_PEA                     214  7.54e-06 SRLLLEDLKK SDYPSKRLIIVG SITGNTNTLA
DHES_HUMAN                  130  8.08e-06 RMLQAFLPDM KRRGSGRVLVTG SVGGLMGLPF
ADH_DROME                   243  1.06e-05 AIWKLDLGTL EAIQWTKHWDSG I         
DHCA_HUMAN                  191  3.38e-05 GVHQKEGWPS SAYGVTKIGVTV LSRIHARKLS
CSGA_MYXXA                   13  8.65e-05 AFATNVCTGP VDVLINNAGVSG LWCALGDVDY
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif EDLAGKNIRVTG MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
ENTA_ECOLI                          1e-12  [1]_236
DHII_HUMAN                        8.6e-10  29_[1]_251
HDHA_ECOLI                        1.1e-09  174_[1]_69
2BHD_STREX                        7.8e-09  1_[1]_242
AP27_MOUSE                        8.8e-09  164_[1]_68
YINL_LISMO                        1.1e-08  [1]_236
HDE_CANTR                         1.6e-08  3_[1]_891
3BHD_COMTE                        1.6e-08  1_[1]_240
RFBB_NEIGO                        2.7e-08  1_[1]_333
FABI_ECOLI                        4.7e-08  1_[1]_249
FIXR_BRAJA                        4.7e-08  204_[1]_62
DHGB_BACME                        5.7e-08  175_[1]_75
BDH_HUMAN                         6.3e-08  50_[1]_281
YURA_MYXXA                        9.5e-08  175_[1]_71
HMTR_LEIMA                        9.5e-08  208_[1]_67
DHMA_FLAS1                          1e-07  9_[1]_249
FVT1_HUMAN                        1.4e-07  201_[1]_119
BUDC_KLETE                        1.7e-07  167_[1]_62
BPHB_PSEPS                        2.5e-07  [1]_263
NODG_RHIME                        3.8e-07  167_[1]_66
YRTP_BACSU                          5e-07  170_[1]_56
BA72_EUBSP                          5e-07  172_[1]_65
DHB2_HUMAN                        5.4e-07  77_[1]_298
LIGD_PSEPA                        1.1e-06  1_[1]_292
MAS1_AGRRA                        2.3e-06  300_[1]_164
RIDH_KLEAE                        4.9e-06  9_[1]_228
GUTD_ECOLI                        6.6e-06  169_[1]_78
DHB3_HUMAN                          7e-06  213_[1]_85
PCR_PEA                           7.5e-06  213_[1]_174
DHES_HUMAN                        8.1e-06  129_[1]_186
ADH_DROME                         1.1e-05  242_[1]_1
DHCA_HUMAN                        3.4e-05  190_[1]_74
CSGA_MYXXA                        8.7e-05  12_[1]_142
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif EDLAGKNIRVTG MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF EDLAGKNIRVTG width=12 seqs=33
ENTA_ECOLI               (    1) MDFSGKNVWVTG  1 
DHII_HUMAN               (   30) EMLQGKKVIVTG  1 
HDHA_ECOLI               (  175) FDLGEKNIRVNG  1 
2BHD_STREX               (    2) NDLSGKTVIITG  1 
AP27_MOUSE               (  165) MELGPHKIRVNS  1 
YINL_LISMO               (    1) MTIKNKVIIITG  1 
HDE_CANTR                (    4) VDFKDKVVIITG  1 
3BHD_COMTE               (    2) NRLQGKVALVTG  1 
RFBB_NEIGO               (    2) QTEGKKNILVTG  1 
FABI_ECOLI               (    2) GFLSGKRILVTG  1 
FIXR_BRAJA               (  205) HDYAPHGIRVNA  1 
DHGB_BACME               (  176) LEYAPKGIRVNN  1 
BDH_HUMAN                (   51) EPVGSKAVLVTG  1 
YURA_MYXXA               (  176) VDLRGTGVRVTC  1 
HMTR_LEIMA               (  209) LELAPLQIRVNG  1 
DHMA_FLAS1               (   10) GRLAGKAAIVTG  1 
FVT1_HUMAN               (  202) MEVKPYNVYITV  1 
BUDC_KLETE               (  168) RDLAPLGITVNG  1 
BPHB_PSEPS               (    1) MKLKGEAVLITG  1 
NODG_RHIME               (  168) QEIATRNITVNC  1 
YRTP_BACSU               (  171) QEVRKHNIRVSA  1 
BA72_EUBSP               (  173) REIIRKNIRVVG  1 
DHB2_HUMAN               (   78) LPVDQKAVLVTG  1 
LIGD_PSEPA               (    2) KDFQDQVAFITG  1 
MAS1_AGRRA               (  301) EDHGTMAAWVTA  1 
RIDH_KLEAE               (   10) TSLSGKVAAITG  1 
GUTD_ECOLI               (  170) LDLAEYGITVHS  1 
DHB3_HUMAN               (  214) EEYKAKEVIIQV  1 
PCR_PEA                  (  214) SDYPSKRLIIVG  1 
DHES_HUMAN               (  130) KRRGSGRVLVTG  1 
ADH_DROME                (  243) EAIQWTKHWDSG  1 
DHCA_HUMAN               (  191) SAYGVTKIGVTV  1 
CSGA_MYXXA               (   13) VDVLINNAGVSG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif EDLAGKNIRVTG MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.18427 E= 1.5e-004 
  -268   -317   -207    137    -39    -68     75   -358     46     20    220     59   -296    159     34      5    -59     -5   -331   -279 
   -75   -320    260    197    -40   -359   -151   -361    -15   -348      5   -171     41    -92     81    -61     13   -354   -333   -280 
  -320   -195   -497    -95    124   -464     61    111   -386    199   -169   -376   -408   -321    -76   -318   -251     86   -268    230 
    76   -319    -47   -137   -356     98   -150    -97    148   -150   -280   -171    -46    194     34     85   -209   -353   -332   -279 
  -141   -318     27     34   -355    133   -149    -97     46   -347   -280    -14    190     44    -37     51     13   -140    140   -279 
  -275   -324   -214    -30   -362   -150    212   -365    308    -69      5    -16   -302     43    -35   -192     61   -358   -336     96 
    32   -325   -215    -30   -364     53   -155   -367    122   -353   -287    236   -303     43     83   -193    -61     64   -337   -286 
    63   -303   -641   -577   -367   -623     64    285   -550   -123   -295   -535   -563   -495   -556   -484   -379    198   -447   -426 
  -153   -192   -493   -416    -11    -69   -301    182   -382    114   -170   -372   -406   -318    209   -313     64   -186    305     17 
  -505   -354    -83   -682   -477   -757   -678    226   -681   -364   -387   -663   -665   -665   -708   -643   -449    303   -662   -599 
  -392   -254   -416   -452   -435   -527     33   -349   -372   -464   -322    196   -437    -25   -388     59    343    -72   -408   -453 
   -55    184   -386   -443   -529    299   -402   -546   -429   -583   -492    -69   -452   -423   -428    -34   -396    -33   -437   -487 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif EDLAGKNIRVTG MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 33 E= 1.5e-004 
 0.000000  0.000000  0.000000  0.151515  0.030303  0.060606  0.030303  0.000000  0.060606  0.121212  0.151515  0.060606  0.000000  0.090909  0.060606  0.060606  0.030303  0.090909  0.000000  0.000000 
 0.060606  0.000000  0.363636  0.242424  0.030303  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.000000  0.060606  0.000000  0.090909  0.030303  0.060606  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.030303  0.090909  0.000000  0.030303  0.121212  0.000000  0.393939  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.151515  0.000000  0.151515 
 0.212121  0.000000  0.030303  0.000000  0.000000  0.212121  0.000000  0.030303  0.151515  0.030303  0.000000  0.000000  0.030303  0.121212  0.060606  0.121212  0.000000  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.060606  0.060606  0.000000  0.272727  0.000000  0.030303  0.060606  0.000000  0.000000  0.030303  0.181818  0.030303  0.030303  0.090909  0.060606  0.030303  0.030303  0.000000 
 0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.090909  0.000000  0.515152  0.060606  0.030303  0.030303  0.000000  0.030303  0.030303  0.000000  0.090909  0.000000  0.000000  0.060606 
 0.151515  0.000000  0.000000  0.030303  0.000000  0.151515  0.000000  0.000000  0.121212  0.000000  0.000000  0.242424  0.000000  0.030303  0.090909  0.000000  0.030303  0.151515  0.000000  0.000000 
 0.181818  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.424242  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.030303  0.060606  0.000000  0.212121  0.000000  0.212121  0.000000  0.000000  0.000000  0.000000  0.242424  0.000000  0.090909  0.000000  0.090909  0.030303 
 0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.272727  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.696970  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.212121  0.000000  0.030303  0.000000  0.090909  0.575758  0.060606  0.000000  0.000000 
 0.090909  0.060606  0.000000  0.000000  0.000000  0.666667  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.060606  0.000000  0.090909  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif EDLAGKNIRVTG MEME-1 regular expression
--------------------------------------------------------------------------------
X[DE]L[AG]GKN[IV][RIL][VI][TN]G
--------------------------------------------------------------------------------




Time  0.19 secs.

********************************************************************************


********************************************************************************
MOTIF ASSGIGKATAKA MEME-2	width =  12  sites =  33  llr = 458  p-value = 7.9e-007  E-value = 7.9e-007
********************************************************************************
--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  5211:::517:2
pos.-specific     C  1::::::::1::
probability       D  :1:::::1:::1
matrix            E  :::::::2::11
                  F  ::::::1:::::
                  G  4218:a11::::
                  H  ::1:::1::::1
                  I  ::::6:::2:1:
                  K  :11:::2:::3:
                  L  :1::2:2:1:21
                  M  ::::::::1:::
                  N  :1::::::::::
                  P  ::::::::::::
                  Q  ::::::::::::
                  R  ::2:::2:::22
                  S  123::::1:1::
                  T  ::::::::3::1
                  V  ::::1:::12:1
                  W  ::::::::::::
                  Y  ::::::1:1:1:

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4      *      
(20.0 bits)      2.7    * *      
                 2.0 *  ***   *  
                 1.3 *********** 
                 0.7 ************
                 0.0 ------------

Multilevel           AASGIGKATAKX
consensus            GS      I   
sequence              G          
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
FIXR_BRAJA                   44  7.38e-11 GEPKVMLLTG ASRGIGHATAKL FSEAGWRIIS
YINL_LISMO                   13  3.40e-10 IKNKVIIITG ASSGIGKATALL LAEKGAKLVL
DHII_HUMAN                   42  6.82e-10 LQGKKVIVTG ASKGIGREMAYH LAKMGAHVVV
ENTA_ECOLI                   13  1.01e-09 FSGKNVWVTG AGKGIGYATALA FVEAGAKVTG
BUDC_KLETE                   10  1.01e-09  MQKVALVTG AGQGIGKAIALR LVKDGFAVAI
FVT1_HUMAN                   40  1.14e-09 LPGAHVVVTG GSSGIGKCIAIE CYKQGAFITL
YRTP_BACSU                   14  1.30e-09 LQHKTALITG GGRGIGRATALA LAKEGVNIGL
PCR_PEA                      94  4.19e-09 LRKGNVVITG ASSGLGLATAKA LAESGKWHVI
RIDH_KLEAE                   22  1.20e-08 LSGKVAAITG AASGIGLECART LLGAGAKVVL
DHCA_HUMAN                   12  2.15e-08 SGIHVALVTG GNKGIGLAIVRD LCRLFSGDVV
AP27_MOUSE                   15  3.13e-08 FSGLRALVTG AGKGIGRDTVKA LHASGAKVVA
HDHA_ECOLI                   19  3.75e-08 LDGKCAIITG AGAGIGKEIAIT FATAGASVVV
HDE_CANTR                   330  4.90e-08 LKDKVVLITG AGAGLGKEYAKW FAKYGAKVVV
DHMA_FLAS1                   22  4.90e-08 LAGKAAIVTG AAGGIGRATVEA YLREGASVVA
MAS1_AGRRA                  253  6.94e-08 HQSPVILVSG SNRGVGKAIAED LIAHGYRLSL
DHES_HUMAN                   10  6.94e-08  ARTVVLITG CSSGIGLHLAVR LASDPSQSFK
BA72_EUBSP                   14  6.94e-08 VQDKVTIITG GTRGIGFAAAKI FIDNGAKVSI
BDH_HUMAN                    63  1.59e-07 VGSKAVLVTG CDSGFGFSLAKH LHSKGFLVFA
DHB3_HUMAN                   56  1.86e-07 SMGQWAVITG AGDGIGKAYSFE LAKRGLNVVL
DHB2_HUMAN                   90  2.18e-07 VDQKAVLVTG GDCGLGHALCKY LDELGFTVFA
BPHB_PSEPS                   13  6.26e-07 LKGEAVLITG GASGLGRALVDR FVAEAKVAVL
ADH_DROME                    14  6.26e-07 LTNKNVIFVA GLGGIGLDTSKE LLKRDLKNLV
NODG_RHIME                   14  8.34e-07 LTGRKALVTG ASGAIGGAIARV LHAQGAIVGL
DHGB_BACME                   15  8.34e-07 LEGKVVVITG SSTGLGKSMAIR FATEKAKVVV
3BHD_COMTE                   14  8.34e-07 LQGKVALVTG GASGVGLEVVKL LLGEGAKVAF
RFBB_NEIGO                   14  2.33e-06 EGKKNILVTG GAGFIGSAVVRH IIQNTRDSVV
2BHD_STREX                   14  3.22e-06 LSGKTVIITG GARGLGAEAARQ AVAAGARVVL
LIGD_PSEPA                   14  8.71e-06 FQDQVAFITG GASGAGFGQAKV FGQAGAKIVV
HMTR_LEIMA                   25  1.86e-05 AKRLGRSIAE GLHAEGYAVCLH YHRSAAEANA
CSGA_MYXXA                   78  2.91e-05 AHVTSRMGSL AANTDGGAYAYR MSKAALNMAV
GUTD_ECOLI                  148  5.53e-05 QINSKSGKVG SKHNSGYSAAKF GGVGLTQSLA
YURA_MYXXA                   95  1.13e-04 AEAGGLDLVV ANAGVGGTTNAK RLPWERVRGI
FABI_ECOLI                   16  2.94e-04 GKRILVTGVA SKLSIAYGIAQA MHREGAELAF
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
FIXR_BRAJA                        7.4e-11  43_[2]_223
YINL_LISMO                        3.4e-10  12_[2]_224
DHII_HUMAN                        6.8e-10  41_[2]_239
ENTA_ECOLI                          1e-09  12_[2]_224
BUDC_KLETE                          1e-09  9_[2]_220
FVT1_HUMAN                        1.1e-09  39_[2]_281
YRTP_BACSU                        1.3e-09  13_[2]_213
PCR_PEA                           4.2e-09  93_[2]_294
RIDH_KLEAE                        1.2e-08  21_[2]_216
DHCA_HUMAN                        2.2e-08  11_[2]_253
AP27_MOUSE                        3.1e-08  14_[2]_218
HDHA_ECOLI                        3.8e-08  18_[2]_225
HDE_CANTR                         4.9e-08  329_[2]_565
DHMA_FLAS1                        4.9e-08  21_[2]_237
MAS1_AGRRA                        6.9e-08  252_[2]_212
DHES_HUMAN                        6.9e-08  9_[2]_306
BA72_EUBSP                        6.9e-08  13_[2]_224
BDH_HUMAN                         1.6e-07  62_[2]_269
DHB3_HUMAN                        1.9e-07  55_[2]_243
DHB2_HUMAN                        2.2e-07  89_[2]_286
BPHB_PSEPS                        6.3e-07  12_[2]_251
ADH_DROME                         6.3e-07  13_[2]_230
NODG_RHIME                        8.3e-07  13_[2]_220
DHGB_BACME                        8.3e-07  14_[2]_236
3BHD_COMTE                        8.3e-07  13_[2]_228
RFBB_NEIGO                        2.3e-06  13_[2]_321
2BHD_STREX                        3.2e-06  13_[2]_230
LIGD_PSEPA                        8.7e-06  13_[2]_280
HMTR_LEIMA                        1.9e-05  24_[2]_251
CSGA_MYXXA                        2.9e-05  77_[2]_77
GUTD_ECOLI                        5.5e-05  147_[2]_100
YURA_MYXXA                        0.00011  94_[2]_152
FABI_ECOLI                        0.00029  15_[2]_235
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF ASSGIGKATAKA width=12 seqs=33
FIXR_BRAJA               (   44) ASRGIGHATAKL  1 
YINL_LISMO               (   13) ASSGIGKATALL  1 
DHII_HUMAN               (   42) ASKGIGREMAYH  1 
ENTA_ECOLI               (   13) AGKGIGYATALA  1 
BUDC_KLETE               (   10) AGQGIGKAIALR  1 
FVT1_HUMAN               (   40) GSSGIGKCIAIE  1 
YRTP_BACSU               (   14) GGRGIGRATALA  1 
PCR_PEA                  (   94) ASSGLGLATAKA  1 
RIDH_KLEAE               (   22) AASGIGLECART  1 
DHCA_HUMAN               (   12) GNKGIGLAIVRD  1 
AP27_MOUSE               (   15) AGKGIGRDTVKA  1 
HDHA_ECOLI               (   19) AGAGIGKEIAIT  1 
HDE_CANTR                (  330) AGAGLGKEYAKW  1 
DHMA_FLAS1               (   22) AAGGIGRATVEA  1 
MAS1_AGRRA               (  253) SNRGVGKAIAED  1 
DHES_HUMAN               (   10) CSSGIGLHLAVR  1 
BA72_EUBSP               (   14) GTRGIGFAAAKI  1 
BDH_HUMAN                (   63) CDSGFGFSLAKH  1 
DHB3_HUMAN               (   56) AGDGIGKAYSFE  1 
DHB2_HUMAN               (   90) GDCGLGHALCKY  1 
BPHB_PSEPS               (   13) GASGLGRALVDR  1 
ADH_DROME                (   14) GLGGIGLDTSKE  1 
NODG_RHIME               (   14) ASGAIGGAIARV  1 
DHGB_BACME               (   15) SSTGLGKSMAIR  1 
3BHD_COMTE               (   14) GASGVGLEVVKL  1 
RFBB_NEIGO               (   14) GAGFIGSAVVRH  1 
2BHD_STREX               (   14) GARGLGAEAARQ  1 
LIGD_PSEPA               (   14) GASGAGFGQAKV  1 
HMTR_LEIMA               (   25) GLHAEGYAVCLH  1 
CSGA_MYXXA               (   78) AANTDGGAYAYR  1 
GUTD_ECOLI               (  148) SKHNSGYSAAKF  1 
YURA_MYXXA               (   95) ANAGVGGTTNAK  1 
FABI_ECOLI               (   16) SKLSIAYGIAQA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.18427 E= 7.9e-007 
   202    229   -661   -657   -622    197   -580   -640   -674   -652   -576   -534   -495   -535   -619     96   -378   -513   -598   -643 
    98   -365     35   -194   -418    107   -193   -429     36    -69   -353    117   -349   -153   -248    180    -69   -422   -396   -335 
   -30    107    -47   -137   -356     22    159   -360    121   -150   -280    -14   -295     44    145    189    -59   -353   -331   -279 
  -139   -337   -317   -379   -111    323   -342   -506   -361   -550   -453    -92   -427   -376   -366   -143   -160   -492   -379   -431 
  -281   -258   -223   -231   -136   -499   -372    353   -354     17    -98   -353   -431   -339   -397   -224   -277     63   -317   -285 
  -198   -346   -337   -399   -504    336   -361   -524   -381   -566   -470   -293   -442   -394   -385   -309   -423   -506   -397   -450 
  -149   -313   -248   -175    113    -15    160   -332    209     79   -279   -204   -326   -119    149    -71   -234   -338   -333    195 
   237     96    -24    109   -352    -87     20   -342   -280   -352   -290   -263   -407   -248   -317     32    -99   -244   -339   -359 
   -30    126   -496   -418   -229   -460   -301    183   -384     45    114   -373   -406     -2   -380   -314    211     28   -269    160 
   263    179   -428   -383   -360   -283   -363   -346   -384   -361   -300    -95   -450   -348   -387     -6   -262     59   -348   -398 
  -143   -304    -50     31    -37   -364   -158     48    248     52   -268   -180   -302     41    145   -193   -212   -134   -326     96 
    56   -313     26     76    -39   -359    250    -95    -16    -17   -275   -173   -297     43    145   -187     13    -56    140      6 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 33 E= 7.9e-007 
 0.454545  0.060606  0.000000  0.000000  0.000000  0.363636  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.121212  0.000000  0.000000  0.000000  0.000000 
 0.242424  0.000000  0.060606  0.000000  0.000000  0.212121  0.000000  0.000000  0.060606  0.060606  0.000000  0.090909  0.000000  0.000000  0.000000  0.242424  0.030303  0.000000  0.000000  0.000000 
 0.090909  0.030303  0.030303  0.000000  0.000000  0.121212  0.060606  0.000000  0.121212  0.030303  0.000000  0.030303  0.000000  0.030303  0.151515  0.272727  0.030303  0.000000  0.000000  0.000000 
 0.060606  0.000000  0.000000  0.000000  0.030303  0.818182  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.030303  0.030303  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.030303  0.030303  0.030303  0.000000  0.000000  0.575758  0.000000  0.181818  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.090909  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.000000  0.969697  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.090909  0.090909  0.060606  0.000000  0.242424  0.181818  0.000000  0.000000  0.000000  0.000000  0.151515  0.030303  0.000000  0.000000  0.000000  0.121212 
 0.515152  0.030303  0.060606  0.181818  0.000000  0.060606  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.090909  0.030303  0.000000  0.000000  0.000000 
 0.090909  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.212121  0.000000  0.121212  0.060606  0.000000  0.000000  0.030303  0.000000  0.000000  0.272727  0.090909  0.000000  0.090909 
 0.666667  0.060606  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.060606  0.000000  0.181818  0.000000  0.000000 
 0.030303  0.000000  0.030303  0.060606  0.030303  0.000000  0.000000  0.090909  0.333333  0.151515  0.000000  0.000000  0.000000  0.030303  0.151515  0.000000  0.000000  0.030303  0.000000  0.060606 
 0.181818  0.000000  0.060606  0.090909  0.030303  0.000000  0.121212  0.030303  0.030303  0.090909  0.000000  0.000000  0.000000  0.030303  0.151515  0.000000  0.060606  0.060606  0.030303  0.030303 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 regular expression
--------------------------------------------------------------------------------
[AG][ASG]SGIGKA[TI]AKX
--------------------------------------------------------------------------------




Time  0.34 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       3.20e-08  1_[1(7.81e-09)]_[2(3.22e-06)]_142_\
    [1(1.06e-05)]_76
3BHD_COMTE                       1.69e-08  1_[1(1.57e-08)]_[2(8.34e-07)]_50_\
    [1(9.92e-06)]_166
ADH_DROME                        6.23e-06  13_[2(6.26e-07)]_217_[1(1.06e-05)]_\
    1
AP27_MOUSE                       3.87e-10  2_[1(1.06e-05)]_[2(3.13e-08)]_138_\
    [1(8.80e-09)]_68
BA72_EUBSP                       4.14e-08  1_[1(5.46e-05)]_[2(6.94e-08)]_125_\
    [2(5.25e-05)]_10_[1(5.00e-07)]_65
BDH_HUMAN                        2.40e-08  50_[1(6.34e-08)]_[2(1.59e-07)]_269
BPHB_PSEPS                       2.07e-07  [1(2.45e-07)]_[2(6.26e-07)]_251
BUDC_KLETE                       2.38e-10  9_[2(1.01e-09)]_53_[1(4.31e-05)]_81_\
    [1(1.69e-07)]_62
DHES_HUMAN                       9.90e-07  9_[2(6.94e-08)]_108_[1(8.08e-06)]_\
    186
DHGB_BACME                       6.21e-08  2_[1(5.94e-07)]_[2(8.34e-07)]_149_\
    [1(5.73e-08)]_75
DHII_HUMAN                       1.46e-12  29_[1(8.57e-10)]_[2(6.82e-10)]_239
DHMA_FLAS1                       7.83e-09  9_[1(1.04e-07)]_[2(4.90e-08)]_147_\
    [1(2.99e-05)]_78
ENTA_ECOLI                       2.22e-15  [1(1.02e-12)]_[2(1.01e-09)]_224
FIXR_BRAJA                       7.36e-12  43_[2(7.38e-11)]_149_[1(4.66e-08)]_\
    62
GUTD_ECOLI                       2.59e-04  147_[2(5.53e-05)]_10_[1(6.55e-06)]_\
    78
HDE_CANTR                        1.37e-08  3_[1(1.57e-08)]_[2(2.60e-05)]_290_\
    [1(2.68e-07)]_[2(4.90e-08)]_565
HDHA_ECOLI                       7.02e-11  6_[1(3.96e-06)]_[2(3.75e-08)]_144_\
    [1(1.13e-09)]_69
LIGD_PSEPA                       1.20e-05  1_[1(1.07e-06)]_[2(8.71e-06)]_280
NODG_RHIME                       3.31e-07  1_[1(3.68e-06)]_[2(8.34e-07)]_142_\
    [1(3.84e-07)]_66
RIDH_KLEAE                       6.88e-08  9_[1(4.93e-06)]_[2(1.20e-08)]_216
YINL_LISMO                       6.42e-12  [1(1.11e-08)]_[2(3.40e-10)]_224
YRTP_BACSU                       8.39e-10  1_[1(1.59e-06)]_[2(1.30e-09)]_145_\
    [1(5.00e-07)]_56
CSGA_MYXXA                       6.42e-04  12_[1(8.65e-05)]_53_[2(2.91e-05)]_\
    77
DHB2_HUMAN                       3.18e-07  77_[1(5.45e-07)]_[2(2.18e-07)]_286
DHB3_HUMAN                       1.99e-06  55_[2(1.86e-07)]_146_[1(7.03e-06)]_\
    85
DHCA_HUMAN                       7.17e-07  11_[2(2.15e-08)]_54_[1(2.64e-05)]_\
    101_[1(3.38e-05)]_74
FABI_ECOLI                       1.25e-05  1_[1(4.66e-08)]_161_[1(7.73e-05)]_\
    76
FVT1_HUMAN                       4.25e-10  39_[2(1.14e-09)]_150_[1(1.40e-07)]_\
    119
HMTR_LEIMA                       2.25e-06  24_[2(1.86e-05)]_172_[1(9.47e-08)]_\
    67
MAS1_AGRRA                       6.39e-07  252_[2(6.94e-08)]_36_[1(2.35e-06)]_\
    164
PCR_PEA                          9.58e-08  81_[1(1.30e-05)]_[2(4.19e-09)]_108_\
    [1(7.54e-06)]_174
RFBB_NEIGO                       1.41e-07  1_[1(2.73e-08)]_[2(2.33e-06)]_321
YURA_MYXXA                       9.82e-06  175_[1(9.47e-08)]_71
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-iMac.local

********************************************************************************
