********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= Primary sequences shuffled preserving 2-mers
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

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COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -p 4 -nsites 27 common/adh.s -oc results/meme33 -mod anr -protein -nmotifs 2 -objfun se -w 12 -hsfrac 0.6 -shuf 2 -nostatus 

model:  mod=           anr    nmotifs=         2    evt=           inf
objective function:           em=       Selective mHG
                              starts=   log likelihood ratio (LLR)
width:  minw=           12    maxw=           12
nsites: minsites=       27    maxsites=       27    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=           49975    maxiter=        50
        distance=    1e-05
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=        0.6
        searchsize=   9996    norand=         no    csites=         -1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 
L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.0095 Y 0.027 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF GGVDVLVNNAGI MEME-1	width =  12  sites =  27  llr = 391  p-value = 5.9e-001  E-value = 5.9e-001
********************************************************************************
--------------------------------------------------------------------------------
	Motif GGVDVLVNNAGI MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  ::1::::::8::
pos.-specific     C  ::::::::1:1:
probability       D  :::4::::::::
matrix            E  1::::::::::1
                  F  ::::::::::::
                  G  53::::::216:
                  H  :::1::::::::
                  I  ::1:113::::3
                  K  :11::::1:::2
                  L  1:2::51:::::
                  M  :::::1:::::1
                  N  :::1:::55:::
                  P  :1::::::::::
                  Q  1::1::::1:::
                  R  :1::::::::::
                  S  1::::::1::11
                  T  :211:::1::::
                  V  ::3:515::::1
                  W  ::::::::::::
                  Y  ::::::::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4             
(20.9 bits)      2.7         **  
                 2.0       ***** 
                 1.3 ************
                 0.7 ************
                 0.0 ------------

Multilevel           GGVDVLVNNAGI
consensus              L   I     
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGVDVLVNNAGI MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
DHCA_HUMAN                   81  3.86e-13 ALRDFLRKEY GGLDVLVNNAGI AFKVADPTPF
3BHD_COMTE                   79  1.74e-12 LVMAAVQRRL GTLNVLVNNAGI LLPGDMETGR
HDE_CANTR                    90  5.35e-12 KIVETAVKNF GTVHVIINNAGI LRDASMKKMT
BA72_EUBSP                   84  6.25e-12 AAVGQVAQKY GRLDVMINNAGI TSNNVFSRVS
CSGA_MYXXA                   11  9.86e-12 MRAFATNVCT GPVDVLINNAGV SGLWCALGDV
HDE_CANTR                   394  9.86e-12 AIIKNVIDKY GTIDILVNNAGI LRDRSFAKMS
DHGB_BACME                   85  4.50e-11 NLVQSAIKEF GKLDVMINNAGM ENPVSSHEMS
BUDC_KLETE                   78  8.44e-11 AAVEQARKAL GGFNVIVNNAGI APSTPIESIT
NODG_RHIME                   79  9.52e-11 ALGQRAEADL EGVDILVNNAGI TKDGLFLHMA
YRTP_BACSU                   82  1.36e-10 QAVAQVKEQL GDIDILINNAGI SKFGGFLDLS
ADH_DROME                    84  1.93e-10 KLLKTIFAQL KTVDVLINGAGI LDDHQIERTI
FVT1_HUMAN                  113  2.72e-10 NVIKQAQEKL GPVDMLVNCAGM AVSGKFEDLE
HMTR_LEIMA                  101  4.24e-10 ELVAACYTHW GRCDVLVNNASS FYPTPLLRND
HDHA_ECOLI                   87  1.34e-09 ALADFAISKL GKVDILVNNAGG GGPKPFDMPM
ENTA_ECOLI                    4  7.75e-08        MDF SGKNVWVTGAGK GIGYATALAF
DHII_HUMAN                   33  1.27e-06 ANEEFRPEML QGKKVIVTGASK GIGREMAYHL
AP27_MOUSE                    6  2.01e-06      MKLNF SGLRALVTGAGK GIGRDTVKAL
FVT1_HUMAN                   31  4.88e-05 PLISPKPLAL PGAHVVVTGGSS GIGKCIAIEC
CSGA_MYXXA                  110  5.14e-05 RSMSTDLRPE GFVTVLLHPGWV QTDMGGPDAT
FVT1_HUMAN                   99  5.70e-05 CISVDVSQDY NQVENVIKQAQE KLGPVDMLVN
FVT1_HUMAN                  166  6.65e-05 VITTMKERRV GRIVFVSSQAGQ LGLFGFTAYS
DHB3_HUMAN                  239  7.37e-05 YAVSTAMTKY LNTNVITKTADE FVKESLNYVT
DHII_HUMAN                  262  7.37e-05 RQEEVYYDSS LWTTLLIRNPCR KILEFLYSTS
MAS1_AGRRA                   73  1.40e-04 SRSSTSSAMV QPISTRKKCTCK VKNIGVCRAP
BA72_EUBSP                  125  1.55e-04 INVTGVFNGA WCAYQCMKDAKK GVIINTASVT
DHII_HUMAN                   69  2.26e-04 AHVVVTARSK ETLQKVVSHCLE LGAASAHYIA
ADH_DROME                   210  5.32e-04 EPQVAEKLLA HPTQPSLACAEN FVKAIELNQN
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGVDVLVNNAGI MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
DHCA_HUMAN                        3.9e-13  80_[1]_184
3BHD_COMTE                        1.7e-12  78_[1]_163
HDE_CANTR                         9.9e-12  89_[1]_292_[1]_501
BA72_EUBSP                        6.3e-12  83_[1]_29_[1]_113
CSGA_MYXXA                        5.1e-05  10_[1]_87_[1]_45
DHGB_BACME                        4.5e-11  84_[1]_166
BUDC_KLETE                        8.4e-11  77_[1]_152
NODG_RHIME                        9.5e-11  78_[1]_155
YRTP_BACSU                        1.4e-10  81_[1]_145
ADH_DROME                         1.9e-10  83_[1]_114_[1]_34
FVT1_HUMAN                        4.9e-05  30_[1]_56_[1]_2_[1]_41_[1]_155
HMTR_LEIMA                        4.2e-10  100_[1]_175
HDHA_ECOLI                        1.3e-09  86_[1]_157
ENTA_ECOLI                        7.8e-08  3_[1]_233
DHII_HUMAN                        0.00023  32_[1]_24_[1]_181_[1]_19
AP27_MOUSE                          2e-06  5_[1]_227
DHB3_HUMAN                        7.4e-05  238_[1]_60
MAS1_AGRRA                        0.00014  72_[1]_392
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGVDVLVNNAGI MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF GGVDVLVNNAGI width=12 seqs=27
DHCA_HUMAN               (   81) GGLDVLVNNAGI  1 
3BHD_COMTE               (   79) GTLNVLVNNAGI  1 
HDE_CANTR                (   90) GTVHVIINNAGI  1 
BA72_EUBSP               (   84) GRLDVMINNAGI  1 
CSGA_MYXXA               (   11) GPVDVLINNAGV  1 
HDE_CANTR                (  394) GTIDILVNNAGI  1 
DHGB_BACME               (   85) GKLDVMINNAGM  1 
BUDC_KLETE               (   78) GGFNVIVNNAGI  1 
NODG_RHIME               (   79) EGVDILVNNAGI  1 
YRTP_BACSU               (   82) GDIDILINNAGI  1 
ADH_DROME                (   84) KTVDVLINGAGI  1 
FVT1_HUMAN               (  113) GPVDMLVNCAGM  1 
HMTR_LEIMA               (  101) GRCDVLVNNASS  1 
HDHA_ECOLI               (   87) GKVDILVNNAGG  1 
ENTA_ECOLI               (    4) SGKNVWVTGAGK  1 
DHII_HUMAN               (   33) QGKKVIVTGASK  1 
AP27_MOUSE               (    6) SGLRALVTGAGK  1 
FVT1_HUMAN               (   31) PGAHVVVTGGSS  1 
CSGA_MYXXA               (  110) GFVTVLLHPGWV  1 
FVT1_HUMAN               (   99) NQVENVIKQAQE  1 
FVT1_HUMAN               (  166) GRIVFVSSQAGQ  1 
DHB3_HUMAN               (  239) LNTNVITKTADE  1 
DHII_HUMAN               (  262) LWTTLLIRNPCR  1 
MAS1_AGRRA               (   73) QPISTRKKCTCK  1 
BA72_EUBSP               (  125) WCAYQCMKDAKK  1 
DHII_HUMAN               (   69) ETLQKVVSHCLE  1 
ADH_DROME                (  210) HPTQPSLACAEN  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGVDVLVNNAGI MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 5.9e-001 
  -250   -299   -189     52   -340    224     94   -345      3    -50   -265      5    -27    131   -166     25   -194   -337    159   -264 
  -246    130    -24   -115    -17    121   -127   -337     68   -324   -257      8    156     67    104   -163    148   -330    162   -257 
   -55    150   -472   -395     13   -437   -278    136     34    119   -147   -350   -383   -297   -357   -291     88    172   -246   -236 
  -246   -296    270     -5   -334   -335    182   -339      8   -325   -258    166   -274    135    -14    -38     36   -117   -309     29 
  -137   -118   -359   -324   -117   -435   -257     70   -172   -163    -72   -151   -142   -106   -305   -309   -101    303   -331   -371 
  -324    126   -480   -399   -196   -465   -294    116   -370    245    124   -372   -385   -292    -71    -95   -253     62    152   -257 
  -270   -166   -442   -383   -225   -446   -285    224    -80    -25     34   -355   -375   -306   -353    -94    -58    247   -270   -263 
  -141   -368   -220   -204   -430   -377     99   -431    149   -415   -354    349   -357   -143    -15     24    124   -426   -390   -339 
  -451    305     -6   -287   -544     96    101   -610   -311   -597   -556    349    -19    128   -393   -255    -55   -604   -529   -428 
   280    124   -430   -386   -364    -63   -365   -352   -388   -366   -304   -378    -73   -348   -389   -134    -82   -240   -351   -401 
  -301    167    -94   -108   -442    296   -275   -455    -97   -206   -394   -234   -383    -33   -302      7   -342   -445    103   -380 
  -248   -292   -190     99   -330   -127   -131    221    170   -320    118      7   -277     66    -14     28   -189    -33   -308   -257 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGVDVLVNNAGI MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 5.9e-001 
 0.000000  0.000000  0.000000  0.074074  0.000000  0.518519  0.037037  0.000000  0.037037  0.074074  0.000000  0.037037  0.037037  0.074074  0.000000  0.074074  0.000000  0.000000  0.037037  0.000000 
 0.000000  0.037037  0.037037  0.000000  0.037037  0.259259  0.000000  0.000000  0.074074  0.000000  0.000000  0.037037  0.148148  0.037037  0.111111  0.000000  0.185185  0.000000  0.037037  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.148148  0.074074  0.222222  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.296296  0.000000  0.000000 
 0.000000  0.000000  0.407407  0.037037  0.000000  0.000000  0.074074  0.000000  0.037037  0.000000  0.000000  0.148148  0.000000  0.074074  0.037037  0.037037  0.074074  0.037037  0.000000  0.037037 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.148148  0.037037  0.037037  0.037037  0.037037  0.037037  0.037037  0.000000  0.000000  0.037037  0.518519  0.000000  0.000000 
 0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.148148  0.000000  0.481481  0.074074  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.148148  0.037037  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.296296  0.037037  0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.481481  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.148148  0.000000  0.000000  0.518519  0.000000  0.000000  0.037037  0.074074  0.148148  0.000000  0.000000  0.000000 
 0.000000  0.111111  0.037037  0.000000  0.000000  0.185185  0.037037  0.000000  0.000000  0.000000  0.000000  0.481481  0.037037  0.074074  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000 
 0.814815  0.037037  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000 
 0.000000  0.074074  0.037037  0.037037  0.000000  0.592593  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.111111  0.000000  0.000000  0.037037  0.000000 
 0.000000  0.000000  0.000000  0.111111  0.000000  0.037037  0.000000  0.333333  0.185185  0.000000  0.074074  0.037037  0.000000  0.037037  0.037037  0.074074  0.000000  0.074074  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGVDVLVNNAGI MEME-1 regular expression
--------------------------------------------------------------------------------
GG[VL]DVL[VI]NNAGI
--------------------------------------------------------------------------------




Time  0.28 secs.

********************************************************************************


********************************************************************************
MOTIF LEDFSRSLAVNY MEME-2	width =  12  sites =  27  llr = 323  p-value = 2.2e-002  E-value = 2.2e-002
********************************************************************************
--------------------------------------------------------------------------------
	Motif LEDFSRSLAVNY MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  :11:1:1:2:::
pos.-specific     C  ::::::1:::::
probability       D  1:2:1:::::1:
matrix            E  :21:1:1:112:
                  F  1::8:::1:::1
                  G  :11:::::::::
                  H  :1:::::::1::
                  I  1::::::1:1:1
                  K  :1:::2::11::
                  L  3:::::1511:1
                  M  1::::::1::::
                  N  ::::::::::4:
                  P  :1::::::::::
                  Q  ::::111:12::
                  R  ::1:14::1:::
                  S  111:212:1:::
                  T  :11:::1:1::1
                  V  2::::::1:2:1
                  W  ::::::::::::
                  Y  ::::::11:::3

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4    *        
(17.3 bits)      2.7    *        
                 2.0    * * *  * 
                 1.3 *  *** * ***
                 0.7 ************
                 0.0 ------------

Multilevel           LXXFXRSLAVNY
consensus                 K    E 
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LEDFSRSLAVNY MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
FVT1_HUMAN                  135  9.24e-09 AVSGKFEDLE VSTFERLMSINY LGSVYPSRAV
DHB3_HUMAN                  205  1.18e-08 YSMYSASKAF VCAFSKALQEEY KAKEVIIQVL
GUTD_ECOLI                  102  2.14e-08 AKAAFISDFQ LGDFDRSLQVNL VGYFLCAREF
3BHD_COMTE                  101  4.72e-08 LLPGDMETGR LEDFSRLLKINT ESVFIGCQQG
NODG_RHIME                  159  1.84e-07 QTNYCASKAG MIGFSKSLAQEI ATRNITVNCV
DHB3_HUMAN                   24  3.01e-07 LLVCLACLAK CVRFSRCVLLNY YKVLPKSFLR
DHB2_HUMAN                  182  3.32e-07 GFPTDGELLL MTDYKQCMAVNF FGTVEVTKTF
DHES_HUMAN                  212  4.41e-07 EVLDRTDIHT FHRFYQYLAHSK QVFREAAQNP
FABI_ECOLI                  200  6.40e-07 GPIRTLAASG IKDFRKMLAHCE AVTPIRRTVT
PCR_PEA                     285  9.20e-07 KDSKVCNMLT MQEFHRRYHEET GITFASLYPG
AP27_MOUSE                   97  1.10e-06 VIMQPFLEVT KEAFDRSFSVNL RSVFQVSQMV
PCR_PEA                     325  1.31e-06 REHIPLFRTL FPPFQKYITKGY VSEEESGKRL
HDHA_ECOLI                  108  1.56e-06 GGGPKPFDMP MADFRRAYELNV FSFFHLSQLV
DHII_HUMAN                  190  1.56e-06 VAAYSASKFA LDGFFSSIRKEY SVSRVNVSIT
ADH_DROME                    98  1.70e-06 VLINGAGILD DHQIERTIAVNY TGLVNTTTAI
DHII_HUMAN                  133  2.38e-06 NTSLNLFHDD IHHVRKSMEVNF LSYVVLTVAA
DHB3_HUMAN                  288  2.59e-06 LSLIPAWAFY SGAFQRLLLTHY VAYLKLNTKV
ENTA_ECOLI                   32  4.57e-06 ALAFVEAGAK VTGFDQAFTQEQ YPFATEVMDV
YURA_MYXXA                  167  4.94e-06 ATRYSASKAF LSTFMESLRVDL RGTGVRVTCI
FIXR_BRAJA                  196  5.78e-06 GSAYATSKAA LASLTRELAHDY APHGIRVNAI
PCR_PEA                     368  6.25e-06 SGVYWSWNNA SASFENQLSQEA SDAEKARKVW
AP27_MOUSE                  193  6.75e-06 LTDMGKKVSA DPEFARKLKERH PLRKFAEVED
2BHD_STREX                  101  9.16e-06 STGMFLETES VERFRKVVDINL TGVFIGMKTV
DHCA_HUMAN                  146  1.15e-05 NVSSIMSVRA LKSCSPELQQKF RSETITEEEL
ENTA_ECOLI                  108  1.43e-05 QTFAVNVGGA FNLFQQTMNQFR RQRGGAIVTV
RFBB_NEIGO                  322  2.19e-05 KIRRDLGWLP LETFESGLRKTV QWYLDNKTRR
FABI_ECOLI                   48  1.21e-04 TYQNDKLKGR VEEFAAQLGSDI VLQCDVAEDA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LEDFSRSLAVNY MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
FVT1_HUMAN                        9.2e-09  134_[2]_186
DHB3_HUMAN                          3e-07  23_[2]_169_[2]_71_[2]_11
GUTD_ECOLI                        2.1e-08  101_[2]_146
3BHD_COMTE                        4.7e-08  100_[2]_141
NODG_RHIME                        1.8e-07  158_[2]_75
DHB2_HUMAN                        3.3e-07  181_[2]_194
DHES_HUMAN                        4.4e-07  211_[2]_104
FABI_ECOLI                        0.00012  47_[2]_140_[2]_51
PCR_PEA                           6.3e-06  284_[2]_28_[2]_31_[2]_20
AP27_MOUSE                        1.1e-06  96_[2]_84_[2]_40
HDHA_ECOLI                        1.6e-06  107_[2]_136
DHII_HUMAN                        1.6e-06  132_[2]_45_[2]_91
ADH_DROME                         1.7e-06  97_[2]_146
ENTA_ECOLI                        1.4e-05  31_[2]_64_[2]_129
YURA_MYXXA                        4.9e-06  166_[2]_80
FIXR_BRAJA                        5.8e-06  195_[2]_71
2BHD_STREX                        9.2e-06  100_[2]_143
DHCA_HUMAN                        1.1e-05  145_[2]_119
RFBB_NEIGO                        2.2e-05  321_[2]_13
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LEDFSRSLAVNY MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF LEDFSRSLAVNY width=12 seqs=27
FVT1_HUMAN               (  135) VSTFERLMSINY  1 
DHB3_HUMAN               (  205) VCAFSKALQEEY  1 
GUTD_ECOLI               (  102) LGDFDRSLQVNL  1 
3BHD_COMTE               (  101) LEDFSRLLKINT  1 
NODG_RHIME               (  159) MIGFSKSLAQEI  1 
DHB3_HUMAN               (   24) CVRFSRCVLLNY  1 
DHB2_HUMAN               (  182) MTDYKQCMAVNF  1 
DHES_HUMAN               (  212) FHRFYQYLAHSK  1 
FABI_ECOLI               (  200) IKDFRKMLAHCE  1 
PCR_PEA                  (  285) MQEFHRRYHEET  1 
AP27_MOUSE               (   97) KEAFDRSFSVNL  1 
PCR_PEA                  (  325) FPPFQKYITKGY  1 
HDHA_ECOLI               (  108) MADFRRAYELNV  1 
DHII_HUMAN               (  190) LDGFFSSIRKEY  1 
ADH_DROME                (   98) DHQIERTIAVNY  1 
DHII_HUMAN               (  133) IHHVRKSMEVNF  1 
DHB3_HUMAN               (  288) SGAFQRLLLTHY  1 
ENTA_ECOLI               (   32) VTGFDQAFTQEQ  1 
YURA_MYXXA               (  167) LSTFMESLRVDL  1 
FIXR_BRAJA               (  196) LASLTRELAHDY  1 
PCR_PEA                  (  368) SASFENQLSQEA  1 
AP27_MOUSE               (  193) DPEFARKLKERH  1 
2BHD_STREX               (  101) VERFRKVVDINL  1 
DHCA_HUMAN               (  146) LKSCSPELQQKF  1 
ENTA_ECOLI               (  108) FNLFQQTMNQFR  1 
RFBB_NEIGO               (  322) LETFESGLRKTV  1 
FABI_ECOLI               (   48) VEEFAAQLGSDI  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LEDFSRSLAVNY MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 2.2e-002 
  -291    150     33   -393    149   -436   -277     57    -57    139    228   -349   -382   -295   -355     13   -222    112   -245   -234 
    -7    130    -24    159   -333    -45    234    -74     69   -324   -257      8     63     67   -158     28     36   -117   -308   -256 
    -7   -296    164    100   -333      7     98   -338    -97   -127   -257   -147    -23     67    104     73     83   -330   -309   -256 
  -413      2   -448   -435    455   -517   -362   -158   -442   -137   -231   -422   -391   -416   -463   -334   -416   -219   -150      6 
   -53   -296     98    133    -17   -335     98   -337      8   -324     28   -147   -273    181    140    135    -36   -330   -308     29 
  -132   -335   -237    -20   -383   -378   -160   -378    201   -361   -297      2    -23    220    282     24   -231   -372   -343   -298 
    -7    227   -189     55   -325   -127   -130   -321      6      6     29   -152   -275    134    -15    158     36   -114   -305    119 
  -492   -338   -631   -547     90   -640   -442     88   -522    257    225   -541   -515   -411   -492   -504   -418    -23   -352    120 
    78   -296    -24     57   -333   -127     98   -337     69    -47   -257      8   -273    181    104     73     36   -330   -308   -256 
  -255   -261   -213     96   -298   -352    235     76    107    -38   -228   -173   -290    244   -181    -44    -37    116   -294   -253 
  -252    131    100    183    -16   -126     98   -345      6   -332   -264    290   -278    -74    -15    -38    -37   -337   -315   -262 
  -162   -152   -291   -103    189   -384    113    -27    -96     -1   -197   -253   -291    -29    -91   -207    -32    -75    -50    387 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LEDFSRSLAVNY MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 2.2e-002 
 0.000000  0.037037  0.074074  0.000000  0.111111  0.000000  0.000000  0.074074  0.037037  0.259259  0.148148  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.185185  0.000000  0.000000 
 0.111111  0.037037  0.037037  0.185185  0.000000  0.074074  0.111111  0.037037  0.074074  0.000000  0.000000  0.037037  0.074074  0.037037  0.000000  0.074074  0.074074  0.037037  0.000000  0.000000 
 0.111111  0.000000  0.185185  0.111111  0.000000  0.111111  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.037037  0.037037  0.111111  0.111111  0.111111  0.000000  0.000000  0.000000 
 0.000000  0.037037  0.000000  0.000000  0.814815  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037 
 0.074074  0.000000  0.111111  0.148148  0.037037  0.000000  0.037037  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.111111  0.148148  0.185185  0.037037  0.000000  0.000000  0.037037 
 0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.222222  0.000000  0.000000  0.037037  0.037037  0.148148  0.407407  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.111111  0.074074  0.000000  0.074074  0.000000  0.037037  0.000000  0.000000  0.037037  0.111111  0.037037  0.000000  0.000000  0.074074  0.037037  0.222222  0.074074  0.037037  0.000000  0.074074 
 0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.111111  0.000000  0.518519  0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.074074 
 0.222222  0.000000  0.037037  0.074074  0.000000  0.037037  0.037037  0.000000  0.074074  0.074074  0.000000  0.037037  0.000000  0.111111  0.111111  0.111111  0.074074  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.111111  0.111111  0.111111  0.074074  0.000000  0.000000  0.000000  0.185185  0.000000  0.037037  0.037037  0.222222  0.000000  0.000000 
 0.000000  0.037037  0.111111  0.222222  0.037037  0.037037  0.037037  0.000000  0.037037  0.000000  0.000000  0.370370  0.000000  0.000000  0.037037  0.037037  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.037037  0.111111  0.000000  0.037037  0.074074  0.037037  0.148148  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.074074  0.074074  0.000000  0.296296 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LEDFSRSLAVNY MEME-2 regular expression
--------------------------------------------------------------------------------
LXXFX[RK]SLAV[NE]Y
--------------------------------------------------------------------------------




Time  0.49 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       4.84e-07  78_[1(4.82e-08)]_10_[2(9.16e-06)]_\
    143
3BHD_COMTE                       1.63e-13  78_[1(1.74e-12)]_10_[2(4.72e-08)]_\
    141
ADH_DROME                        5.01e-10  83_[1(1.93e-10)]_2_[2(1.70e-06)]_\
    146
AP27_MOUSE                       2.03e-06  5_[1(2.01e-06)]_57_[1(2.76e-06)]_10_\
    [2(1.10e-06)]_84_[2(6.75e-06)]_40
BA72_EUBSP                       1.44e-08  83_[1(6.25e-12)]_154
BDH_HUMAN                        2.37e-03  53_[1(8.15e-05)]_70_[1(1.84e-05)]_\
    196
BPHB_PSEPS                       3.33e-05  76_[1(2.41e-07)]_187
BUDC_KLETE                       3.36e-07  [1(8.57e-05)]_65_[1(8.44e-11)]_152
DHES_HUMAN                       3.31e-07  [1(6.32e-05)]_69_[1(3.98e-07)]_118_\
    [2(4.41e-07)]_104
DHGB_BACME                       1.67e-08  84_[1(4.50e-11)]_166
DHII_HUMAN                       2.61e-06  32_[1(1.27e-06)]_88_[2(2.38e-06)]_\
    45_[2(1.56e-06)]_60_[1(7.37e-05)]_19
DHMA_FLAS1                       9.32e-03  195_[1(3.75e-05)]_63
ENTA_ECOLI                       3.72e-07  3_[1(7.75e-08)]_16_[2(4.57e-06)]_27_\
    [1(1.66e-06)]_10_[2(6.04e-05)]_3_[2(1.43e-05)]_129
FIXR_BRAJA                       2.55e-06  109_[1(3.71e-07)]_74_[2(5.78e-06)]_\
    71
GUTD_ECOLI                       2.62e-07  79_[1(1.04e-05)]_10_[2(2.14e-08)]_\
    146
HDE_CANTR                        6.14e-08  6_[1(1.84e-05)]_71_[1(5.35e-12)]_\
    219_[1(1.74e-05)]_61_[1(9.86e-12)]_501
HDHA_ECOLI                       2.96e-09  86_[1(1.34e-09)]_9_[2(1.56e-06)]_\
    136
LIGD_PSEPA                       3.84e-01  305
NODG_RHIME                       2.75e-11  78_[1(9.52e-11)]_68_[2(1.84e-07)]_\
    75
RIDH_KLEAE                       9.55e-02  249
YINL_LISMO                       1.33e-02  80_[1(1.65e-05)]_156
YRTP_BACSU                       3.76e-07  81_[1(1.36e-10)]_145
CSGA_MYXXA                       1.28e-08  10_[1(9.86e-12)]_87_[1(5.14e-05)]_\
    45
DHB2_HUMAN                       1.85e-05  158_[1(2.71e-05)]_11_[2(3.32e-07)]_\
    194
DHB3_HUMAN                       7.47e-07  23_[2(3.01e-07)]_87_[1(3.95e-05)]_\
    70_[2(1.18e-08)]_22_[1(7.37e-05)]_37_[2(2.59e-06)]_11
DHCA_HUMAN                       9.23e-12  80_[1(3.86e-13)]_53_[2(1.15e-05)]_\
    119
FABI_ECOLI                       3.64e-04  199_[2(6.40e-07)]_51
FVT1_HUMAN                       7.77e-12  30_[1(4.88e-05)]_56_[1(5.70e-05)]_2_\
    [1(2.72e-10)]_10_[2(9.24e-09)]_19_[1(6.65e-05)]_155
HMTR_LEIMA                       4.89e-07  100_[1(4.24e-10)]_175
MAS1_AGRRA                       3.77e-04  317_[1(3.71e-07)]_147
PCR_PEA                          1.88e-06  162_[1(7.97e-07)]_110_[2(9.20e-07)]_\
    28_[2(1.31e-06)]_31_[2(6.25e-06)]_20
RFBB_NEIGO                       3.72e-03  321_[2(2.19e-05)]_13
YURA_MYXXA                       6.06e-06  87_[1(1.27e-06)]_67_[2(4.94e-06)]_\
    80
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-iMac.local

********************************************************************************
