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XSTREME - Motif Discovery and Enrichment Analysis
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MEME version 5.5.3 (Sat Jun 10 16:19:38 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Charles E. Grant and Timothy L. Bailey, "XSTREME: comprehensive motif analysis of biological sequence datasets",
BioRxiv, September 3, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies (from file `results/xstreme7/background'):
A 0.22130 C 0.27870 G 0.27870 T 0.22130 

MOTIF 6-GCCACCAGRGGGCRG STREME-6

letter-probability matrix: alength= 4 w= 15 nsites= 43 E= 3.5e+000
  0.116622	  0.000932	  0.812178	  0.070269	
  0.093445	  0.789001	  0.024108	  0.093445	
  0.047093	  0.928059	  0.000932	  0.023916	
  0.719243	  0.000932	  0.209556	  0.070269	
  0.000740	  0.789001	  0.209519	  0.000740	
  0.023916	  0.742649	  0.024108	  0.209327	
  0.811949	  0.070461	  0.070498	  0.047093	
  0.000740	  0.070461	  0.928059	  0.000740	
  0.394775	  0.070461	  0.441282	  0.093482	
  0.023916	  0.093637	  0.858530	  0.023916	
  0.000740	  0.163203	  0.812140	  0.023916	
  0.000740	  0.024108	  0.904883	  0.070269	
  0.070269	  0.858530	  0.024108	  0.047093	
  0.487517	  0.070461	  0.441282	  0.000740	
  0.023916	  0.232695	  0.649943	  0.093445	

MOTIF DHWTGCTGAGTCAT MEME-1

letter-probability matrix: alength= 4 w= 14 nsites= 60 E= 4.7e-045
  0.366667	  0.033333	  0.200000	  0.400000	
  0.250000	  0.366667	  0.133333	  0.250000	
  0.500000	  0.133333	  0.050000	  0.316667	
  0.000000	  0.050000	  0.116667	  0.833333	
  0.016667	  0.066667	  0.866667	  0.050000	
  0.083333	  0.850000	  0.066667	  0.000000	
  0.116667	  0.000000	  0.000000	  0.883333	
  0.033333	  0.066667	  0.900000	  0.000000	
  0.850000	  0.000000	  0.000000	  0.150000	
  0.066667	  0.250000	  0.683333	  0.000000	
  0.000000	  0.016667	  0.000000	  0.983333	
  0.000000	  0.950000	  0.050000	  0.000000	
  0.983333	  0.000000	  0.016667	  0.000000	
  0.000000	  0.300000	  0.083333	  0.616667	

MOTIF 2-CCCCTCCCCT STREME-2

letter-probability matrix: alength= 4 w= 10 nsites= 124 E= 5.2e-001
  0.024221	  0.812096	  0.000479	  0.163204	
  0.000381	  0.823997	  0.088899	  0.086723	
  0.000381	  0.974920	  0.024319	  0.000381	
  0.000381	  0.867582	  0.131657	  0.000381	
  0.133952	  0.000479	  0.141394	  0.724175	
  0.064922	  0.905399	  0.029299	  0.000381	
  0.136538	  0.661981	  0.148480	  0.053002	
  0.000381	  0.934199	  0.065040	  0.000381	
  0.060000	  0.675754	  0.131619	  0.132627	
  0.160378	  0.131739	  0.213319	  0.494565	

MOTIF MA0466.1 CEBPB

letter-probability matrix: alength= 4 w= 11 nsites= 38 E= 1.66e-003
  0.130721	  0.100770	  0.337880	  0.430629	
  0.755804	  0.058978	  0.185217	  0.000000	
  0.000000	  0.000000	  0.000000	  1.000000	
  0.000000	  0.000000	  0.000000	  1.000000	
  0.045792	  0.000000	  0.759151	  0.195057	
  0.000000	  1.000000	  0.000000	  0.000000	
  0.750950	  0.055059	  0.100659	  0.093332	
  0.086980	  0.522182	  0.000000	  0.390838	
  0.604569	  0.395431	  0.000000	  0.000000	
  1.000000	  0.000000	  0.000000	  0.000000	
  0.000000	  0.362213	  0.020534	  0.617253	

URL http://jaspar2014.genereg.net?ID=MA0466.1&rm=present&collection=CORE

MOTIF 1-VTTATC STREME-1

letter-probability matrix: alength= 4 w= 6 nsites= 134 E= 1.9e-001
  0.248460	  0.434145	  0.315979	  0.001416	
  0.001416	  0.001783	  0.046128	  0.950673	
  0.001416	  0.001783	  0.001783	  0.995018	
  0.995018	  0.001783	  0.001783	  0.001416	
  0.001416	  0.001783	  0.001783	  0.995018	
  0.001416	  0.995385	  0.001783	  0.001416	

MOTIF CCDCYYCC MEME-4

letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 1.6e-009
  0.000000	  1.000000	  0.000000	  0.000000	
  0.000000	  1.000000	  0.000000	  0.000000	
  0.413793	  0.000000	  0.284483	  0.301724	
  0.000000	  1.000000	  0.000000	  0.000000	
  0.000000	  0.612069	  0.000000	  0.387931	
  0.000000	  0.474138	  0.000000	  0.525862	
  0.000000	  1.000000	  0.000000	  0.000000	
  0.000000	  1.000000	  0.000000	  0.000000	

MOTIF 4-CAACCACA STREME-4

letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 8.5e-001
  0.131973	  0.734900	  0.033967	  0.099161	
  0.982797	  0.001313	  0.014848	  0.001043	
  0.996332	  0.001313	  0.001313	  0.001043	
  0.105633	  0.751341	  0.011054	  0.131973	
  0.004062	  0.960929	  0.001313	  0.033696	
  0.884329	  0.056171	  0.033967	  0.025533	
  0.033696	  0.931295	  0.033967	  0.001043	
  0.767177	  0.066673	  0.001313	  0.164837	

MOTIF MA0148.3 FOXA1

letter-probability matrix: alength= 4 w= 15 nsites= 28 E= 4.57e-001
  0.196656	  0.219329	  0.187386	  0.396628	
  0.211696	  0.311296	  0.214967	  0.262041	
  0.139131	  0.388859	  0.241458	  0.230553	
  0.324200	  0.196156	  0.165440	  0.314204	
  0.003181	  0.000000	  0.000545	  0.996274	
  0.267312	  0.000000	  0.732688	  0.000000	
  0.000000	  0.000000	  0.000000	  1.000000	
  0.000000	  0.000000	  0.058706	  0.941294	
  0.000000	  0.000000	  0.129907	  0.870093	
  0.829335	  0.000000	  0.170665	  0.000000	
  0.000000	  0.934024	  0.000000	  0.065976	
  0.417712	  0.120638	  0.000000	  0.461650	
  0.037577	  0.331516	  0.063250	  0.567657	
  0.486278	  0.000045	  0.002863	  0.510814	
  0.218421	  0.118275	  0.427799	  0.235505	

URL http://jaspar2014.genereg.net?ID=MA0148.3&rm=present&collection=CORE

MOTIF 5-GACTACAK STREME-5

letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.3e+000
  0.000655	  0.000825	  0.794272	  0.204249	
  0.997696	  0.000825	  0.000825	  0.000655	
  0.000655	  0.590877	  0.214587	  0.193882	
  0.000655	  0.000825	  0.050374	  0.948146	
  0.997696	  0.000825	  0.000825	  0.000655	
  0.000655	  0.886792	  0.029833	  0.082720	
  0.631894	  0.021333	  0.193996	  0.152777	
  0.199288	  0.091456	  0.457314	  0.251943	

MOTIF WAAAAAAAAAAAVAA MEME-2

letter-probability matrix: alength= 4 w= 15 nsites= 24 E= 1.7e-024
  0.500000	  0.000000	  0.166667	  0.333333	
  0.666667	  0.000000	  0.291667	  0.041667	
  0.583333	  0.250000	  0.083333	  0.083333	
  0.916667	  0.083333	  0.000000	  0.000000	
  1.000000	  0.000000	  0.000000	  0.000000	
  0.833333	  0.166667	  0.000000	  0.000000	
  0.875000	  0.000000	  0.000000	  0.125000	
  0.916667	  0.000000	  0.000000	  0.083333	
  0.583333	  0.208333	  0.208333	  0.000000	
  1.000000	  0.000000	  0.000000	  0.000000	
  0.916667	  0.083333	  0.000000	  0.000000	
  0.833333	  0.000000	  0.166667	  0.000000	
  0.416667	  0.208333	  0.375000	  0.000000	
  0.958333	  0.041667	  0.000000	  0.000000	
  0.833333	  0.000000	  0.125000	  0.041667	

