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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.3 (Release date: Fri Jun 9 08:12:01 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGU

strands: +

Background letter frequencies
A 0.333 C 0.171 G 0.145 U 0.352 

MOTIF 1-HUGUAWAUAH STREME-1
letter-probability matrix: alength= 4 w= 10 nsites= 351 E= 4.4e-011
 0.226978 0.366888 0.064190 0.341945
 0.000205 0.000105 0.004363 0.995327
 0.000205 0.000105 0.999473 0.000217
 0.000205 0.000105 0.000089 0.999601
 0.916624 0.018968 0.025721 0.038688
 0.533429 0.149071 0.025727 0.291773
 0.999589 0.000105 0.000089 0.000217
 0.011062 0.000105 0.000089 0.988743
 0.999589 0.000105 0.000089 0.000217
 0.354054 0.185514 0.108245 0.352187

MOTIF 2-UAUAUAUAUAUAW STREME-2
letter-probability matrix: alength= 4 w= 13 nsites= 204 E= 5.6e-007
 0.000291 0.024439 0.000126 0.975144
 0.847827 0.024416 0.000126 0.127630
 0.012418 0.115338 0.000126 0.872118
 0.963036 0.030468 0.006189 0.000308
 0.060927 0.194192 0.012251 0.732629
 0.884223 0.000149 0.085008 0.030620
 0.063438 0.066835 0.006189 0.863539
 0.896344 0.012278 0.072881 0.018497
 0.021509 0.024399 0.054694 0.899398
 0.765877 0.006212 0.097250 0.130661
 0.039703 0.091095 0.006189 0.863013
 0.895977 0.000149 0.042580 0.061293
 0.312556 0.127336 0.048629 0.511478

MOTIF 3-GAAGAAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 139 E= 5.8e-003
 0.054176 0.054127 0.794062 0.097635
 0.866160 0.011034 0.085460 0.037345
 0.801255 0.118750 0.000225 0.079770
 0.000517 0.032581 0.966356 0.000547
 0.676325 0.075677 0.225913 0.022085
 0.721026 0.048734 0.112407 0.117833
 0.024718 0.004732 0.970002 0.000547
 0.195444 0.577410 0.096300 0.130846

MOTIF 4-UUUUCUUYUUY STREME-4
letter-probability matrix: alength= 4 w= 11 nsites= 214 E= 3.4e-001
 0.046009 0.168800 0.000136 0.785055
 0.000313 0.230778 0.000136 0.768773
 0.000313 0.045688 0.124155 0.829844
 0.000313 0.076849 0.000136 0.922701
 0.000313 0.999219 0.000136 0.000332
 0.000313 0.118962 0.137215 0.743511
 0.052536 0.026275 0.117633 0.803556
 0.000313 0.385359 0.000136 0.614192
 0.000313 0.268098 0.172554 0.559035
 0.032952 0.247557 0.172563 0.546927
 0.041816 0.594400 0.065409 0.298375

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Stopped because 3 consecutive motifs exceeded the p-value threshold (1e-10).
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COMMAND:	streme -p common/Puf3p.s -oc results/streme7 -objfun de -order 1 -nmotifs 2 -rna -pvt 1e-10 -hofract 0.2 -verbosity 1 
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CPU:		Timothys-iMac.local
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FINALTIME:	7.44 seconds
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