********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.3 (Release date: Sat Jun 10 16:19:38 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= Primary sequences shuffled preserving 2-mers
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

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COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -p 4 -nsites 27 common/adh.s -oc results/meme45 -mod zoops -protein -nmotifs 2 -objfun nz -w 12 -hsfrac 0.5 -shuf 2 -nostatus 

model:  mod=         zoops    nmotifs=         2    evt=           inf
objective function:           em=       Noise-injected mHG
                              starts=   log likelihood ratio (LLR)
width:  minw=           12    maxw=           12
nsites: minsites=       27    maxsites=       27    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=           74865    maxiter=        50
        distance=    1e-05
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=        0.5
        searchsize=   9996    norand=         no    csites=         -1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.112 C 0.0116 D 0.0518 E 0.0549 F 0.036 G 0.0888 H 0.0178 I 0.0589 K 0.0527 
L 0.0912 M 0.0255 N 0.0413 P 0.0407 Q 0.0306 R 0.0484 S 0.061 T 0.0574 V 0.0821 
W 0.0103 Y 0.0266 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF LGRVDVLVNNAG MEME-1	width =  12  sites =  27  llr = 549  p-value = 3.1e-005  E-value = 3.1e-005
********************************************************************************
--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :::::1::1:91
pos.-specific     C  ::::::::::::
probability       D  ::::9:::::::
matrix            E  11::::::::::
                  F  2:::::::::::
                  G  181::1:::::9
                  H  ::::::::::::
                  I  :::2:213::::
                  K  ::1:::::::::
                  L  3::3:17:::::
                  M  ::::::1:::::
                  N  ::::1:::89::
                  P  ::2:::::::::
                  Q  ::::::::::::
                  R  ::3:::::::::
                  S  ::::::::::::
                  T  1:1:::::::::
                  V  :::4:4:6::::
                  W  ::::::::::::
                  Y  1:::::::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4     *   **  
(29.3 bits)      2.7     *  *****
                 2.0  * ** ******
                 1.3 ************
                 0.7 ************
                 0.0 ------------

Multilevel           LGRVDVLVNNAG
consensus              PL I I    
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
DHCA_HUMAN                   80  4.95e-13 RALRDFLRKE YGGLDVLVNNAG IAFKVADPTP
HDE_CANTR                   393  5.82e-13 EAIIKNVIDK YGTIDILVNNAG ILRDRSFAKM
HDHA_ECOLI                   86  7.60e-13 SALADFAISK LGKVDILVNNAG GGGPKPFDMP
CSGA_MYXXA                   10  1.97e-12  MRAFATNVC TGPVDVLINNAG VSGLWCALGD
MAS1_AGRRA                  317  2.90e-12 AAWVTAAVEK FGRIDGLVNNAG YGEPVNLDKH
BA72_EUBSP                   83  4.39e-12 MAAVGQVAQK YGRLDVMINNAG ITSNNVFSRV
DHGB_BACME                   84  1.14e-11 INLVQSAIKE FGKLDVMINNAG MENPVSSHEM
2BHD_STREX                   78  1.66e-11 QRVVAYAREE FGSVDGLVNNAG ISTGMFLETE
HMTR_LEIMA                  100  2.19e-11 AELVAACYTH WGRCDVLVNNAS SFYPTPLLRN
YRTP_BACSU                   81  2.63e-11 NQAVAQVKEQ LGDIDILINNAG ISKFGGFLDL
3BHD_COMTE                   78  4.49e-11 TLVMAAVQRR LGTLNVLVNNAG ILLPGDMETG
NODG_RHIME                   78  5.36e-11 KALGQRAEAD LEGVDILVNNAG ITKDGLFLHM
DHES_HUMAN                   81  5.36e-11 SVAAARERVT EGRVDVLVCNAG LGLLGPLEAL
FVT1_HUMAN                  112  7.01e-11 ENVIKQAQEK LGPVDMLVNCAG MAVSGKFEDL
AP27_MOUSE                   74  2.35e-10 WDATEKALGG IGPVDLLVNNAA LVIMQPFLEV
BUDC_KLETE                   77  2.00e-09 FAAVEQARKA LGGFNVIVNNAG IAPSTPIESI
BPHB_PSEPS                   76  2.15e-09 KQAASRCVAR FGKIDTLIPNAG IWDYSTALVD
PCR_PEA                     162  2.69e-09 RQFVDNFRRS EMPLDVLINNAA VYFPTAKEPS
GUTD_ECOLI                   79  5.57e-09 LALSRGVDEI FGRVDLLVYSAG IAKAAFISDF
FIXR_BRAJA                  109  1.71e-08 AITEVKKRLA GAPLHALVNNAG VSPKTPTGDR
ENTA_ECOLI                   70  1.71e-08 AQVCQRLLAE TERLDALVNAAG ILRMGATDQL
ADH_DROME                    83  1.71e-08 TKLLKTIFAQ LKTVDVLINGAG ILDDHQIERT
RIDH_KLEAE                   86  2.10e-08 DNLLQGILQL TGRLDIFHANAG AYIGGPVAEG
DHMA_FLAS1                  195  2.25e-08 RHGILVNMIA PGPVDVTGNNTG YSEPRLAEQV
YINL_LISMO                   80  4.13e-08 KKLVELAIER YGKVDAIFLNAG IMPNSPLSAL
YURA_MYXXA                   87  1.32e-07 LERIRALDAE AGGLDLVVANAG VGGTTNAKRL
DHB3_HUMAN                  122  8.63e-07 IYEHIKEKLA GLEIGILVNNVG MLPNLLPSHF
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
DHCA_HUMAN                        4.9e-13  79_[1]_185
HDE_CANTR                         5.8e-13  392_[1]_502
HDHA_ECOLI                        7.6e-13  85_[1]_158
CSGA_MYXXA                          2e-12  9_[1]_145
MAS1_AGRRA                        2.9e-12  316_[1]_148
BA72_EUBSP                        4.4e-12  82_[1]_155
DHGB_BACME                        1.1e-11  83_[1]_167
2BHD_STREX                        1.7e-11  77_[1]_166
HMTR_LEIMA                        2.2e-11  99_[1]_176
YRTP_BACSU                        2.6e-11  80_[1]_146
3BHD_COMTE                        4.5e-11  77_[1]_164
NODG_RHIME                        5.4e-11  77_[1]_156
DHES_HUMAN                        5.4e-11  80_[1]_235
FVT1_HUMAN                          7e-11  111_[1]_209
AP27_MOUSE                        2.3e-10  73_[1]_159
BUDC_KLETE                          2e-09  76_[1]_153
BPHB_PSEPS                        2.2e-09  75_[1]_188
PCR_PEA                           2.7e-09  161_[1]_226
GUTD_ECOLI                        5.6e-09  78_[1]_169
FIXR_BRAJA                        1.7e-08  108_[1]_158
ENTA_ECOLI                        1.7e-08  69_[1]_167
ADH_DROME                         1.7e-08  82_[1]_161
RIDH_KLEAE                        2.1e-08  85_[1]_152
DHMA_FLAS1                        2.3e-08  194_[1]_64
YINL_LISMO                        4.1e-08  79_[1]_157
YURA_MYXXA                        1.3e-07  86_[1]_160
DHB3_HUMAN                        8.6e-07  121_[1]_177
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF LGRVDVLVNNAG width=12 seqs=27
DHCA_HUMAN               (   80) YGGLDVLVNNAG  1 
HDE_CANTR                (  393) YGTIDILVNNAG  1 
HDHA_ECOLI               (   86) LGKVDILVNNAG  1 
CSGA_MYXXA               (   10) TGPVDVLINNAG  1 
MAS1_AGRRA               (  317) FGRIDGLVNNAG  1 
BA72_EUBSP               (   83) YGRLDVMINNAG  1 
DHGB_BACME               (   84) FGKLDVMINNAG  1 
2BHD_STREX               (   78) FGSVDGLVNNAG  1 
HMTR_LEIMA               (  100) WGRCDVLVNNAS  1 
YRTP_BACSU               (   81) LGDIDILINNAG  1 
3BHD_COMTE               (   78) LGTLNVLVNNAG  1 
NODG_RHIME               (   78) LEGVDILVNNAG  1 
DHES_HUMAN               (   81) EGRVDVLVCNAG  1 
FVT1_HUMAN               (  112) LGPVDMLVNCAG  1 
AP27_MOUSE               (   74) IGPVDLLVNNAA  1 
BUDC_KLETE               (   77) LGGFNVIVNNAG  1 
BPHB_PSEPS               (   76) FGKIDTLIPNAG  1 
PCR_PEA                  (  162) EMPLDVLINNAA  1 
GUTD_ECOLI               (   79) FGRVDLLVYSAG  1 
FIXR_BRAJA               (  109) GAPLHALVNNAG  1 
ENTA_ECOLI               (   70) TERLDALVNAAG  1 
ADH_DROME                (   83) LKTVDVLINGAG  1 
RIDH_KLEAE               (   86) TGRLDIFHANAG  1 
DHMA_FLAS1               (  195) PGPVDVTGNNTG  1 
YINL_LISMO               (   80) YGKVDAIFLNAG  1 
YURA_MYXXA               (   87) AGGLDLVVANAG  1 
DHB3_HUMAN               (  122) GLEIGILVNNVG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 14434 bayes= 8.9365 E= 3.1e-005 
  -134   -166   -406     15    218    -55   -152    -22   -323    127   -155   -319    -36   -270   -325   -267     77   -177    169    260 
  -190   -323   -302    -54   -472    320   -327   -491   -126   -227    -59   -259   -413   -360   -350   -282   -398   -478   -364   -416 
  -269   -316    -24    -11   -357     48   -144   -362    145   -348   -281   -152    217    -88    216    -42     84   -354   -330   -278 
  -487    153   -691   -631      6   -682   -546    174   -609    181   -263   -594   -604   -537   -613   -553   -417    225   -463   -458 
  -403   -326    409   -104   -416   -264    -47   -425   -379   -458   -414      5   -445   -307   -390   -320   -383   -440   -362   -359 
   -10   -172   -470   -398   -219    -51   -288    184   -369     30     50   -360   -387   -308   -363   -303    -46    222   -262   -253 
  -421   -266   -504   -417    -36   -550   -339      2   -395    306     95   -432   -397   -292   -364   -404   -128   -127   -291   -315 
  -208   -140   -389   -351    -74   -217      3    145   -353   -230   -218   -364   -340   -320   -331   -326   -193    303   -331   -348 
  -238    -32   -218   -399   -362   -402    -64   -331   -305   -284   -356    437   -188   -227   -345   -175   -261   -412   -285   -134 
  -285    -11   -224   -404   -370   -259    -72   -340   -312   -431   -364    440   -372   -234   -352   -120   -265   -418   -293   -334 
   295   -130   -466   -425   -400   -307   -399   -377   -427   -401   -340   -406   -448   -379   -424   -162    -72   -110   -388   -436 
  -113   -316   -316   -377   -482    328   -340   -500   -360   -543   -446   -271   -418   -371   -363   -120   -393   -479   -376   -428 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 3.1e-005 
 0.037037  0.000000  0.000000  0.074074  0.185185  0.074074  0.000000  0.037037  0.000000  0.259259  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.111111  0.000000  0.037037  0.148148 
 0.037037  0.000000  0.000000  0.074074  0.000000  0.777778  0.000000  0.000000  0.037037  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.037037  0.000000  0.148148  0.000000  0.000000  0.148148  0.000000  0.000000  0.000000  0.222222  0.000000  0.259259  0.037037  0.111111  0.000000  0.000000  0.000000 
 0.000000  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.185185  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.407407  0.000000  0.000000 
 0.000000  0.000000  0.851852  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.111111  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.222222  0.000000  0.111111  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.407407  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.074074  0.000000  0.740741  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.037037  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.629630  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.777778  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037 
 0.037037  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.851852  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000 
 0.925926  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000 
 0.074074  0.000000  0.000000  0.000000  0.000000  0.888889  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 regular expression
--------------------------------------------------------------------------------
LG[RP][VL]D[VI]L[VI]NNAG
--------------------------------------------------------------------------------




Time  0.28 secs.

********************************************************************************


********************************************************************************
MOTIF VTGASSGIGKAI MEME-2	width =  12  sites =  27  llr = 536  p-value = 3.1e-005  E-value = 3.1e-005
********************************************************************************
--------------------------------------------------------------------------------
	Motif VTGASSGIGKAI MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  :::531::::61
pos.-specific     C  :::1::::::::
probability       D  ::::1:::::::
matrix            E  ::::::::::2:
                  F  :::::::::1::
                  G  ::a3319:a:::
                  H  :::::::::1::
                  I  4::::::6:::3
                  K  :::::2:::3::
                  L  :::::::3:2:1
                  M  :::::::::::1
                  N  ::::1:::::::
                  P  ::::::::::::
                  Q  ::::::::::::
                  R  :::::2:::2::
                  S  :::133::::1:
                  T  :a:::::::::3
                  V  5::::::1:::1
                  W  ::::::::::::
                  Y  :::::::::::1

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0  *          
Entropy          3.4  **     *   
(28.7 bits)      2.7 ***   ***   
                 2.0 ****  *** * 
                 1.3 ************
                 0.7 ************
                 0.0 ------------

Multilevel           VTGASSGIGKAI
consensus            I  GA  L RET
sequence                 G       
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VTGASSGIGKAI MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
YINL_LISMO                   10  6.03e-14  MTIKNKVII ITGASSGIGKAT ALLLAEKGAK
FVT1_HUMAN                   37  6.12e-12 PLALPGAHVV VTGGSSGIGKCI AIECYKQGAF
YRTP_BACSU                   11  7.14e-12 MQSLQHKTAL ITGGGRGIGRAT ALALAKEGVN
DHII_HUMAN                   39  1.38e-11 PEMLQGKKVI VTGASKGIGREM AYHLAKMGAH
BUDC_KLETE                    7  1.38e-11     MQKVAL VTGAGQGIGKAI ALRLVKDGFA
ENTA_ECOLI                   10  5.67e-11  MDFSGKNVW VTGAGKGIGYAT ALAFVEAGAK
DHCA_HUMAN                    9  6.42e-11   SSGIHVAL VTGGNKGIGLAI VRDLCRLFSG
DHB3_HUMAN                   53  7.35e-11 FLRSMGQWAV ITGAGDGIGKAY SFELAKRGLN
DHMA_FLAS1                   19  7.35e-11 PGRLAGKAAI VTGAAGGIGRAT VEAYLREGAS
PCR_PEA                      91  8.23e-11 KKTLRKGNVV ITGASSGLGLAT AKALAESGKW
RIDH_KLEAE                   19  8.23e-11 NTSLSGKVAA ITGAASGIGLEC ARTLLGAGAK
HDHA_ECOLI                   16  9.28e-11 NLRLDGKCAI ITGAGAGIGKEI AITFATAGAS
DHES_HUMAN                    7  1.30e-10     ARTVVL ITGCSSGIGLHL AVRLASDPSQ
AP27_MOUSE                   12  1.80e-10 KLNFSGLRAL VTGAGKGIGRDT VKALHASGAK
FIXR_BRAJA                   41  2.22e-10 VDRGEPKVML LTGASRGIGHAT AKLFSEAGWR
BPHB_PSEPS                   10  2.74e-10  MKLKGEAVL ITGGASGLGRAL VDRFVAEAKV
DHB2_HUMAN                   87  1.01e-09 LLPVDQKAVL VTGGDCGLGHAL CKYLDELGFT
HDE_CANTR                   327  1.10e-09 TVSLKDKVVL ITGAGAGLGKEY AKWFAKYGAK
BA72_EUBSP                   11  1.81e-09 MNLVQDKVTI ITGGTRGIGFAA AKIFIDNGAK
DHGB_BACME                   12  3.91e-09 YKDLEGKVVV ITGSSTGLGKSM AIRFATEKAK
3BHD_COMTE                   11  5.27e-09 TNRLQGKVAL VTGGASGVGLEV VKLLLGEGAK
BDH_HUMAN                    60  6.56e-09 AEPVGSKAVL VTGCDSGFGFSL AKHLHSKGFL
HMTR_LEIMA                   11  1.01e-08 MTAPTVPVAL VTGAAKRLGRSI AEGLHAEGYA
2BHD_STREX                   11  1.33e-08 MNDLSGKTVI ITGGARGLGAEA ARQAVAAGAR
MAS1_AGRRA                  250  1.64e-08 VEIHQSPVIL VSGSNRGVGKAI AEDLIAHGYR
NODG_RHIME                   11  1.64e-08 MFELTGRKAL VTGASGAIGGAI ARVLHAQGAI
RFBB_NEIGO                   11  4.21e-08 MQTEGKKNIL VTGGAGFIGSAV VRHIIQNTRD
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VTGASSGIGKAI MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
YINL_LISMO                          6e-14  9_[2]_227
FVT1_HUMAN                        6.1e-12  36_[2]_284
YRTP_BACSU                        7.1e-12  10_[2]_216
DHII_HUMAN                        1.4e-11  38_[2]_242
BUDC_KLETE                        1.4e-11  6_[2]_223
ENTA_ECOLI                        5.7e-11  9_[2]_227
DHCA_HUMAN                        6.4e-11  8_[2]_256
DHB3_HUMAN                        7.3e-11  52_[2]_246
DHMA_FLAS1                        7.3e-11  18_[2]_240
PCR_PEA                           8.2e-11  90_[2]_297
RIDH_KLEAE                        8.2e-11  18_[2]_219
HDHA_ECOLI                        9.3e-11  15_[2]_228
DHES_HUMAN                        1.3e-10  6_[2]_309
AP27_MOUSE                        1.8e-10  11_[2]_221
FIXR_BRAJA                        2.2e-10  40_[2]_226
BPHB_PSEPS                        2.7e-10  9_[2]_254
DHB2_HUMAN                          1e-09  86_[2]_289
HDE_CANTR                         1.1e-09  326_[2]_568
BA72_EUBSP                        1.8e-09  10_[2]_227
DHGB_BACME                        3.9e-09  11_[2]_239
3BHD_COMTE                        5.3e-09  10_[2]_231
BDH_HUMAN                         6.6e-09  59_[2]_272
HMTR_LEIMA                          1e-08  10_[2]_265
2BHD_STREX                        1.3e-08  10_[2]_233
MAS1_AGRRA                        1.6e-08  249_[2]_215
NODG_RHIME                        1.6e-08  10_[2]_223
RFBB_NEIGO                        4.2e-08  10_[2]_324
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VTGASSGIGKAI MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF VTGASSGIGKAI width=12 seqs=27
YINL_LISMO               (   10) ITGASSGIGKAT  1 
FVT1_HUMAN               (   37) VTGGSSGIGKCI  1 
YRTP_BACSU               (   11) ITGGGRGIGRAT  1 
DHII_HUMAN               (   39) VTGASKGIGREM  1 
BUDC_KLETE               (    7) VTGAGQGIGKAI  1 
ENTA_ECOLI               (   10) VTGAGKGIGYAT  1 
DHCA_HUMAN               (    9) VTGGNKGIGLAI  1 
DHB3_HUMAN               (   53) ITGAGDGIGKAY  1 
DHMA_FLAS1               (   19) VTGAAGGIGRAT  1 
PCR_PEA                  (   91) ITGASSGLGLAT  1 
RIDH_KLEAE               (   19) ITGAASGIGLEC  1 
HDHA_ECOLI               (   16) ITGAGAGIGKEI  1 
DHES_HUMAN               (    7) ITGCSSGIGLHL  1 
AP27_MOUSE               (   12) VTGAGKGIGRDT  1 
FIXR_BRAJA               (   41) LTGASRGIGHAT  1 
BPHB_PSEPS               (   10) ITGGASGLGRAL  1 
DHB2_HUMAN               (   87) VTGGDCGLGHAL  1 
HDE_CANTR                (  327) ITGAGAGLGKEY  1 
BA72_EUBSP               (   11) ITGGTRGIGFAA  1 
DHGB_BACME               (   12) ITGSSTGLGKSM  1 
3BHD_COMTE               (   11) VTGGASGVGLEV  1 
BDH_HUMAN                (   60) VTGCDSGFGFSL  1 
HMTR_LEIMA               (   11) VTGAAKRLGRSI  1 
2BHD_STREX               (   11) ITGGARGLGAEA  1 
MAS1_AGRRA               (  250) VSGSNRGVGKAI  1 
NODG_RHIME               (   11) VTGASGAIGGAI  1 
RFBB_NEIGO               (   11) VTGGAGFIGSAV  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VTGASSGIGKAI MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 14434 bayes= 8.9365 E= 3.1e-005 
  -517   -345   -738   -704   -447   -767   -730    294   -698   -107   -356   -670   -682   -680   -749   -657   -447    261   -649   -579 
  -369   -263   -460   -490   -463   -501   -394   -384   -411   -493   -356   -292   -450   -350   -422    -24    398   -379   -434   -481 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
   220    256   -629   -624   -590    184   -549   -606   -640   -618   -543   -505   -467   -505   -587     33   -349   -480   -566   -611 
   114   -392     67   -324   -570    145   -271   -640   -356   -631   -590    104   -446   -312   -437    215    -54   -597   -556   -461 
   -53    131    -25   -118   -337      7   -130   -341    171   -328   -261   -150   -277     66    169    197    -37   -334   -312   -260 
  -190   -323   -303   -365    -98    329   -328   -492   -347   -536   -438   -259   -413   -362   -122   -282   -399   -478   -364   -417 
  -485   -340   -566   -549    -15   -640   -503    345   -511    129   -181   -508   -557   -468   -541   -498   -397     19   -405   -400 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
  -125   -295   -214   -142     79   -129    183   -320    232     77   -259   -172   -296    -88    196    -45   -205   -322   -315     31 
   234    130    -52    161   -392   -309     66   -386   -279   -393   -332   -220   -401   -236   -331     63   -268   -295   -378   -379 
   -55    150   -473   -395   -206   -437   -279    207   -362     69    139   -351   -383   -297   -357   -291    201      9   -246    130 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VTGASSGIGKAI MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 3.1e-005 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.444444  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.518519  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.962963  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.518519  0.074074  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.259259  0.000000  0.074074  0.000000  0.000000  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.296296  0.037037  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.037037  0.000000  0.000000  0.111111  0.000000  0.000000  0.185185  0.000000  0.000000  0.000000  0.000000  0.037037  0.185185  0.296296  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.888889  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.629630  0.000000  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.074074  0.037037  0.074074  0.000000  0.296296  0.185185  0.000000  0.000000  0.000000  0.000000  0.222222  0.037037  0.000000  0.000000  0.000000  0.037037 
 0.555556  0.037037  0.037037  0.222222  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.259259  0.000000  0.148148  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.259259  0.074074  0.000000  0.074074 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VTGASSGIGKAI MEME-2 regular expression
--------------------------------------------------------------------------------
[VI]TG[AG][SAG]SG[IL]G[KR][AE][IT]
--------------------------------------------------------------------------------




Time  0.51 secs.

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********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       4.35e-13  10_[2(1.33e-08)]_55_[1(1.66e-11)]_\
    166
3BHD_COMTE                       4.56e-13  10_[2(5.27e-09)]_55_[1(4.49e-11)]_\
    164
ADH_DROME                        2.09e-05  82_[1(1.71e-08)]_161
AP27_MOUSE                       7.98e-14  11_[2(1.80e-10)]_50_[1(2.35e-10)]_\
    159
BA72_EUBSP                       1.63e-14  10_[2(1.81e-09)]_60_[1(4.39e-12)]_\
    69_[2(1.71e-05)]_74
BDH_HUMAN                        2.53e-08  59_[2(6.56e-09)]_63_[1(1.62e-06)]_\
    197
BPHB_PSEPS                       1.31e-12  9_[2(2.74e-10)]_54_[1(2.15e-09)]_\
    188
BUDC_KLETE                       5.11e-14  6_[2(1.38e-11)]_58_[1(2.00e-09)]_\
    153
DHES_HUMAN                       2.51e-14  6_[2(1.30e-10)]_62_[1(5.36e-11)]_\
    235
DHGB_BACME                       9.73e-14  11_[2(3.91e-09)]_60_[1(1.14e-11)]_\
    167
DHII_HUMAN                       1.77e-09  38_[2(1.38e-11)]_59_[1(6.74e-05)]_\
    171
DHMA_FLAS1                       3.42e-12  18_[2(7.35e-11)]_53_[1(1.26e-05)]_\
    99_[1(2.25e-08)]_64
ENTA_ECOLI                       1.72e-12  9_[2(5.67e-11)]_48_[1(1.71e-08)]_\
    167
FIXR_BRAJA                       8.11e-12  40_[2(2.22e-10)]_56_[1(1.71e-08)]_\
    158
GUTD_ECOLI                       7.67e-07  78_[1(5.57e-09)]_169
HDE_CANTR                        1.85e-14  12_[2(2.47e-08)]_64_[1(7.97e-10)]_\
    226_[2(1.10e-09)]_54_[1(5.82e-13)]_502
HDHA_ECOLI                       1.72e-16  15_[2(9.28e-11)]_58_[1(7.60e-13)]_\
    158
LIGD_PSEPA                       4.03e-03  10_[2(3.36e-06)]_283
NODG_RHIME                       1.53e-12  10_[2(1.64e-08)]_55_[1(5.36e-11)]_\
    156
RIDH_KLEAE                       3.04e-12  18_[2(8.23e-11)]_55_[1(2.10e-08)]_\
    152
YINL_LISMO                       5.24e-15  9_[2(6.03e-14)]_58_[1(4.13e-08)]_\
    157
YRTP_BACSU                       3.89e-16  10_[2(7.14e-12)]_58_[1(2.63e-11)]_\
    146
CSGA_MYXXA                       5.01e-09  9_[1(1.97e-12)]_145
DHB2_HUMAN                       1.48e-07  86_[2(1.01e-09)]_59_[1(5.32e-05)]_\
    218
DHB3_HUMAN                       1.52e-10  52_[2(7.35e-11)]_57_[1(8.63e-07)]_\
    177
DHCA_HUMAN                       9.28e-17  8_[2(6.42e-11)]_59_[1(4.95e-13)]_\
    185
FABI_ECOLI                       1.40e-02  262
FVT1_HUMAN                       1.71e-15  36_[2(6.12e-12)]_63_[1(7.01e-11)]_\
    209
HMTR_LEIMA                       5.49e-13  10_[2(1.01e-08)]_77_[1(2.19e-11)]_\
    99_[1(7.41e-05)]_65
MAS1_AGRRA                       3.41e-13  249_[2(1.64e-08)]_55_[1(2.90e-12)]_\
    148
PCR_PEA                          1.07e-12  90_[2(8.23e-11)]_59_[1(2.69e-09)]_\
    226
RFBB_NEIGO                       7.61e-05  10_[2(4.21e-08)]_324
YURA_MYXXA                       1.92e-05  86_[1(1.32e-07)]_160
--------------------------------------------------------------------------------

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Stopped because requested number of motifs (2) found.
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CPU: Timothys-iMac.local

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