********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.3 (Release date: Sat Jun 10 16:19:38 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= Primary sequences shuffled preserving 2-mers
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -p 4 common/adh.s -oc results/meme44 -mod oops -protein -nmotifs 2 -objfun nz -w 12 -hsfrac 0.5 -shuf 2 -nostatus 

model:  mod=          oops    nmotifs=         2    evt=           inf
objective function:           em=       Noise-injected mHG
                              starts=   log likelihood ratio (LLR)
width:  minw=           12    maxw=           12
nsites: minsites=       33    maxsites=       33    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=        dmix    b=               0    maxiter=        50
        distance=    1e-05
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=        0.5
        searchsize=   9996    norand=         no    csites=         -1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.112 C 0.0116 D 0.0518 E 0.0549 F 0.036 G 0.0888 H 0.0178 I 0.0589 K 0.0527 
L 0.0912 M 0.0255 N 0.0413 P 0.0407 Q 0.0306 R 0.0484 S 0.061 T 0.0574 V 0.0821 
W 0.0103 Y 0.0266 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF VAJVTGAASGJG MEME-1	width =  12  sites =  33  llr = 599  p-value = 2.1e-005  E-value = 2.1e-005
********************************************************************************
--------------------------------------------------------------------------------
	Motif VAJVTGAASGJG MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  14::::5311::
pos.-specific     C  ::::::1:1:::
probability       D  :::::::1::::
matrix            E  ::::::::::::
                  F  ::::::::::::
                  G  :::::a4228:9
                  H  ::::::::::::
                  I  :124::::::5:
                  K  1:::::::2:::
                  L  ::5:::::::3:
                  M  ::::::::::::
                  N  2::::::1::::
                  P  ::::::::::::
                  Q  ::::::::1:::
                  R  1:::::::2:::
                  S  ::::1:123::1
                  T  11::9::::1::
                  V  4425::::::1:
                  W  ::::::::::::
                  Y  ::::::::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4     **     *
(26.2 bits)      2.7    ***   * *
                 2.0  * ****  ***
                 1.3 ************
                 0.7 ************
                 0.0 ------------

Multilevel           VALVTGAASGIG
consensus             VII  GG  L 
sequence                    S    
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VAJVTGAASGJG MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
DHES_HUMAN                    4  4.89e-15        ART VVLITGCSSGIG LHLAVRLASD
YINL_LISMO                    7  5.52e-12     MTIKNK VIIITGASSGIG KATALLLAEK
BUDC_KLETE                    4  2.06e-11        MQK VALVTGAGQGIG KAIALRLVKD
DHCA_HUMAN                    6  3.37e-11      SSGIH VALVTGGNKGIG LAIVRDLCRL
ENTA_ECOLI                    7  3.96e-11     MDFSGK NVWVTGAGKGIG YATALAFVEA
DHII_HUMAN                   36  5.43e-11 EFRPEMLQGK KVIVTGASKGIG REMAYHLAKM
FVT1_HUMAN                   34  8.33e-11 SPKPLALPGA HVVVTGGSSGIG KCIAIECYKQ
PCR_PEA                      88  1.07e-10 SEGKKTLRKG NVVITGASSGLG LATAKALAES
AP27_MOUSE                    9  1.21e-10   MKLNFSGL RALVTGAGKGIG RDTVKALHAS
YRTP_BACSU                    8  1.55e-10    MQSLQHK TALITGGGRGIG RATALALAKE
HDE_CANTR                    10  2.16e-10  MSPVDFKDK VVIITGAGGGLG KYYSLEFAKL
BPHB_PSEPS                    7  2.69e-10     MKLKGE AVLITGGASGLG RALVDRFVAE
3BHD_COMTE                    8  3.36e-10    TNRLQGK VALVTGGASGVG LEVVKLLLGE
RIDH_KLEAE                   16  3.74e-10 SSMNTSLSGK VAAITGAASGIG LECARTLLGA
DHMA_FLAS1                   16  4.15e-10 SRRPGRLAGK AAIVTGAAGGIG RATVEAYLRE
HDHA_ECOLI                   13  5.65e-10 NSDNLRLDGK CAIITGAGAGIG KEIAITFATA
2BHD_STREX                    8  5.65e-10    MNDLSGK TVIITGGARGLG AEAARQAVAA
DHB2_HUMAN                   84  7.59e-10 GQELLPVDQK AVLVTGGDCGLG HALCKYLDEL
DHB3_HUMAN                   50  8.36e-10 PKSFLRSMGQ WAVITGAGDGIG KAYSFELAKR
BA72_EUBSP                    8  9.19e-10    MNLVQDK VTIITGGTRGIG FAAAKIFIDN
FIXR_BRAJA                   38  2.12e-09 NARVDRGEPK VMLLTGASRGIG HATAKLFSEA
BDH_HUMAN                    57  3.04e-09 ASAAEPVGSK AVLVTGCDSGFG FSLAKHLHSK
HMTR_LEIMA                    8  3.94e-09    MTAPTVP VALVTGAAKRLG RSIAEGLHAE
DHGB_BACME                    9  4.29e-09   MYKDLEGK VVVITGSSTGLG KSMAIRFATE
RFBB_NEIGO                    8  4.67e-09    MQTEGKK NILVTGGAGFIG SAVVRHIIQN
NODG_RHIME                    8  6.54e-09    MFELTGR KALVTGASGAIG GAIARVLHAQ
LIGD_PSEPA                    8  7.72e-09    MKDFQDQ VAFITGGASGAG FGQAKVFGQA
MAS1_AGRRA                  247  7.12e-08 HWTVEIHQSP VILVSGSNRGVG KAIAEDLIAH
GUTD_ECOLI                    4  2.15e-07        MNQ VAVVIGGGQTLG AFLCHGLAAE
FABI_ECOLI                    8  1.12e-06    MGFLSGK RILVTGVASKLS IAYGIAQAMH
CSGA_MYXXA                   19  2.72e-06 CTGPVDVLIN NAGVSGLWCALG DVDYADMART
ADH_DROME                     8  4.52e-06    SFTLTNK NVIFVAGLGGIG LDTSKELLKR
YURA_MYXXA                  118  5.64e-06 LPWERVRGII DTNVTGAAATLS AVLPQMVERK
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VAJVTGAASGJG MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
DHES_HUMAN                        4.9e-15  3_[1]_312
YINL_LISMO                        5.5e-12  6_[1]_230
BUDC_KLETE                        2.1e-11  3_[1]_226
DHCA_HUMAN                        3.4e-11  5_[1]_259
ENTA_ECOLI                          4e-11  6_[1]_230
DHII_HUMAN                        5.4e-11  35_[1]_245
FVT1_HUMAN                        8.3e-11  33_[1]_287
PCR_PEA                           1.1e-10  87_[1]_300
AP27_MOUSE                        1.2e-10  8_[1]_224
YRTP_BACSU                        1.5e-10  7_[1]_219
HDE_CANTR                         2.2e-10  9_[1]_885
BPHB_PSEPS                        2.7e-10  6_[1]_257
3BHD_COMTE                        3.4e-10  7_[1]_234
RIDH_KLEAE                        3.7e-10  15_[1]_222
DHMA_FLAS1                        4.1e-10  15_[1]_243
HDHA_ECOLI                        5.6e-10  12_[1]_231
2BHD_STREX                        5.6e-10  7_[1]_236
DHB2_HUMAN                        7.6e-10  83_[1]_292
DHB3_HUMAN                        8.4e-10  49_[1]_249
BA72_EUBSP                        9.2e-10  7_[1]_230
FIXR_BRAJA                        2.1e-09  37_[1]_229
BDH_HUMAN                           3e-09  56_[1]_275
HMTR_LEIMA                        3.9e-09  7_[1]_268
DHGB_BACME                        4.3e-09  8_[1]_242
RFBB_NEIGO                        4.7e-09  7_[1]_327
NODG_RHIME                        6.5e-09  7_[1]_226
LIGD_PSEPA                        7.7e-09  7_[1]_286
MAS1_AGRRA                        7.1e-08  246_[1]_218
GUTD_ECOLI                        2.2e-07  3_[1]_244
FABI_ECOLI                        1.1e-06  7_[1]_243
CSGA_MYXXA                        2.7e-06  18_[1]_136
ADH_DROME                         4.5e-06  7_[1]_236
YURA_MYXXA                        5.6e-06  117_[1]_129
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VAJVTGAASGJG MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF VAJVTGAASGJG width=12 seqs=33
DHES_HUMAN               (    4) VVLITGCSSGIG  1 
YINL_LISMO               (    7) VIIITGASSGIG  1 
BUDC_KLETE               (    4) VALVTGAGQGIG  1 
DHCA_HUMAN               (    6) VALVTGGNKGIG  1 
ENTA_ECOLI               (    7) NVWVTGAGKGIG  1 
DHII_HUMAN               (   36) KVIVTGASKGIG  1 
FVT1_HUMAN               (   34) HVVVTGGSSGIG  1 
PCR_PEA                  (   88) NVVITGASSGLG  1 
AP27_MOUSE               (    9) RALVTGAGKGIG  1 
YRTP_BACSU               (    8) TALITGGGRGIG  1 
HDE_CANTR                (   10) VVIITGAGGGLG  1 
BPHB_PSEPS               (    7) AVLITGGASGLG  1 
3BHD_COMTE               (    8) VALVTGGASGVG  1 
RIDH_KLEAE               (   16) VAAITGAASGIG  1 
DHMA_FLAS1               (   16) AAIVTGAAGGIG  1 
HDHA_ECOLI               (   13) CAIITGAGAGIG  1 
2BHD_STREX               (    8) TVIITGGARGLG  1 
DHB2_HUMAN               (   84) AVLVTGGDCGLG  1 
DHB3_HUMAN               (   50) WAVITGAGDGIG  1 
BA72_EUBSP               (    8) VTIITGGTRGIG  1 
FIXR_BRAJA               (   38) VMLLTGASRGIG  1 
BDH_HUMAN                (   57) AVLVTGCDSGFG  1 
HMTR_LEIMA               (    8) VALVTGAAKRLG  1 
DHGB_BACME               (    9) VVVITGSSTGLG  1 
RFBB_NEIGO               (    8) NILVTGGAGFIG  1 
NODG_RHIME               (    8) KALVTGASGAIG  1 
LIGD_PSEPA               (    8) VAFITGGASGAG  1 
MAS1_AGRRA               (  247) VILVSGSNRGVG  1 
GUTD_ECOLI               (    4) VAVVIGGGQTLG  1 
FABI_ECOLI               (    8) RILVTGVASKLS  1 
CSGA_MYXXA               (   19) NAGVSGLWCALG  1 
ADH_DROME                (    8) NVIFVAGLGGIG  1 
YURA_MYXXA               (  118) DTNVTGAAATLS  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VAJVTGAASGJG MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 14434 bayes= 8.19757 E= 2.1e-005 
     4    109    -51   -150   -341   -366     73   -320     43   -329   -268    172   -304   -103     32   -195     12    209    140   -279 
   184   -328   -685   -629   -415   -668   -559    121   -607   -334     17   -588   -610   -559   -621   -535      7    212   -519   -487 
  -156   -195   -497   -419    -13   -162   -304    198   -386    219   -166    -51   -407   -320   -380   -317   -250     86    149   -261 
  -547   -376   -768   -730    -26   -792   -729    278   -723   -129   -360   -697   -704   -685   -761   -682   -478    268   -628   -586 
  -390   -252   -434   -462   -434   -535   -366   -109   -376   -461   -320   -258   -438   -318   -391     22    386   -152   -407   -455 
  -198   -346   -337   -399   -504    336   -361   -524   -381   -566   -470   -293   -442   -394   -385   -309   -423   -506   -397   -450 
   205    225   -615   -593   -555    193   -535   -551   -602   -163   -503   -510   -489   -500   -570      4   -361   -139   -540   -582 
   134   -347     33   -243   -447    129   -233   -450   -238   -158   -389     68   -385   -205   -301    182    -73   -437    150   -375 
   -76    204    -48   -143   -362     53   -154   -366    148   -352   -285   -173   -301    112    146    204    -60   -358   -336   -284 
  -139   -337   -316   -378   -112    320   -341   -505   -140   -549   -452   -273   -427   -375   -136   -296    -74   -492   -378   -430 
  -188   -372   -690   -647    -23   -712   -570    323   -619    179   -254   -609   -627   -548   -629   -582   -453    -16   -467   -471 
  -346   -354   -349   -411   -515    334   -372   -535   -394   -577   -482   -305   -452   -405   -397    -53   -432   -517   -408   -461 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VAJVTGAASGJG MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 33 E= 2.1e-005 
 0.121212  0.030303  0.030303  0.000000  0.000000  0.000000  0.030303  0.000000  0.060606  0.000000  0.000000  0.151515  0.000000  0.000000  0.060606  0.000000  0.060606  0.424242  0.030303  0.000000 
 0.424242  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.121212  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.060606  0.363636  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.030303  0.030303  0.000000  0.242424  0.000000  0.454545  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.151515  0.030303  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.393939  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.545455  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.060606  0.878788  0.030303  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.000000  0.969697  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.454545  0.060606  0.000000  0.000000  0.000000  0.363636  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.030303  0.000000  0.000000 
 0.303030  0.000000  0.060606  0.000000  0.000000  0.242424  0.000000  0.000000  0.000000  0.030303  0.000000  0.060606  0.000000  0.000000  0.000000  0.242424  0.030303  0.000000  0.030303  0.000000 
 0.060606  0.060606  0.030303  0.000000  0.000000  0.151515  0.000000  0.000000  0.151515  0.000000  0.000000  0.000000  0.000000  0.060606  0.151515  0.303030  0.030303  0.000000  0.000000  0.000000 
 0.060606  0.000000  0.000000  0.000000  0.030303  0.787879  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.060606  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.545455  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.939394  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VAJVTGAASGJG MEME-1 regular expression
--------------------------------------------------------------------------------
V[AV][LI][VI]TG[AG][AGS]SG[IL]G
--------------------------------------------------------------------------------




Time  0.37 secs.

********************************************************************************


********************************************************************************
MOTIF GRLDVLVNNAGI MEME-2	width =  12  sites =  33  llr = 589  p-value = 1.8e-004  E-value = 1.8e-004
********************************************************************************
--------------------------------------------------------------------------------
	Motif GRLDVLVNNAGI MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  ::::1::1181:
pos.-specific     C  ::::::::::::
probability       D  :::8::::::::
matrix            E  1:::::::::::
                  F  ::1::1::::::
                  G  72::1:::::8:
                  H  :::::::1::::
                  I  ::2:212::::4
                  K  12::::::::::
                  L  ::3:27:1:::1
                  M  ::::11:::::1
                  N  :::1:::78:::
                  P  :2::::::::::
                  Q  ::::::::::::
                  R  :2::::::::::
                  S  ::::::::1:::
                  T  :1:1::::::::
                  V  ::3:316::::2
                  W  :::1::::::::
                  Y  :::::::::::1

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4    *    *   
(25.7 bits)      2.7    *   ** * 
                 2.0 *  * ****** 
                 1.3 ************
                 0.7 ************
                 0.0 ------------

Multilevel           GGLDVLVNNAGI
consensus             RV   I     
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GRLDVLVNNAGI MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
DHCA_HUMAN                   81  2.53e-13 ALRDFLRKEY GGLDVLVNNAGI AFKVADPTPF
HDE_CANTR                   394  4.82e-13 AIIKNVIDKY GTIDILVNNAGI LRDRSFAKMS
MAS1_AGRRA                  318  5.26e-12 AWVTAAVEKF GRIDGLVNNAGY GEPVNLDKHV
BA72_EUBSP                   84  5.89e-12 AAVGQVAQKY GRLDVMINNAGI TSNNVFSRVS
2BHD_STREX                   79  6.43e-12 RVVAYAREEF GSVDGLVNNAGI STGMFLETES
NODG_RHIME                   79  1.17e-11 ALGQRAEADL EGVDILVNNAGI TKDGLFLHMA
YRTP_BACSU                   82  1.27e-11 QAVAQVKEQL GDIDILINNAGI SKFGGFLDLS
3BHD_COMTE                   79  1.51e-11 LVMAAVQRRL GTLNVLVNNAGI LLPGDMETGR
HDHA_ECOLI                   87  2.80e-11 ALADFAISKL GKVDILVNNAGG GGPKPFDMPM
DHGB_BACME                   85  4.73e-11 NLVQSAIKEF GKLDVMINNAGM ENPVSSHEMS
FVT1_HUMAN                  113  1.01e-10 NVIKQAQEKL GPVDMLVNCAGM AVSGKFEDLE
DHES_HUMAN                   82  1.76e-10 VAAARERVTE GRVDVLVCNAGL GLLGPLEALG
BUDC_KLETE                   78  3.28e-10 AAVEQARKAL GGFNVIVNNAGI APSTPIESIT
AP27_MOUSE                   75  3.83e-10 DATEKALGGI GPVDLLVNNAAL VIMQPFLEVT
HMTR_LEIMA                  101  6.49e-10 ELVAACYTHW GRCDVLVNNASS FYPTPLLRND
BDH_HUMAN                   136  1.25e-09 DCPFEPEGPE KGMWGLVNNAGI STFGEVEFTS
BPHB_PSEPS                   77  2.54e-09 QAASRCVARF GKIDTLIPNAGI WDYSTALVDL
GUTD_ECOLI                   80  3.35e-09 ALSRGVDEIF GRVDLLVYSAGI AKAAFISDFQ
PCR_PEA                     163  3.59e-09 QFVDNFRRSE MPLDVLINNAAV YFPTAKEPSF
ENTA_ECOLI                   71  3.85e-09 QVCQRLLAET ERLDALVNAAGI LRMGATDQLS
ADH_DROME                    84  7.57e-09 KLLKTIFAQL KTVDVLINGAGI LDDHQIERTI
FIXR_BRAJA                  110  1.13e-08 ITEVKKRLAG APLHALVNNAGV SPKTPTGDRM
YURA_MYXXA                   88  1.66e-08 ERIRALDAEA GGLDLVVANAGV GGTTNAKRLP
DHMA_FLAS1                  196  4.56e-08 HGILVNMIAP GPVDVTGNNTGY SEPRLAEQVL
YINL_LISMO                   81  4.85e-08 KLVELAIERY GKVDAIFLNAGI MPNSPLSALK
DHB2_HUMAN                  159  1.35e-07 YSKVAAMLQD RGLWAVINNAGV LGFPTDGELL
RIDH_KLEAE                   87  1.35e-07 NLLQGILQLT GRLDIFHANAGA YIGGPVAEGD
DHB3_HUMAN                  123  7.43e-07 YEHIKEKLAG LEIGILVNNVGM LPNLLPSHFL
DHII_HUMAN                  111  1.67e-06 QFVAQAGKLM GGLDMLILNHIT NTSLNLFHDD
FABI_ECOLI                   83  1.45e-05 TMFAELGKVW PKFDGFVHSIGF APGDQLDGDY
LIGD_PSEPA                   83  3.85e-05 AADEVEAVFG QAPTLLSNTAGV NSFGPIEKTT
RFBB_NEIGO                  109  9.74e-05 AGEFIRTNIV GTFDLLEAARAY WQQMPSEKRE
CSGA_MYXXA                  110  1.02e-04 RSMSTDLRPE GFVTVLLHPGWV QTDMGGPDAT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GRLDVLVNNAGI MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
DHCA_HUMAN                        2.5e-13  80_[2]_184
HDE_CANTR                         4.8e-13  393_[2]_501
MAS1_AGRRA                        5.3e-12  317_[2]_147
BA72_EUBSP                        5.9e-12  83_[2]_154
2BHD_STREX                        6.4e-12  78_[2]_165
NODG_RHIME                        1.2e-11  78_[2]_155
YRTP_BACSU                        1.3e-11  81_[2]_145
3BHD_COMTE                        1.5e-11  78_[2]_163
HDHA_ECOLI                        2.8e-11  86_[2]_157
DHGB_BACME                        4.7e-11  84_[2]_166
FVT1_HUMAN                          1e-10  112_[2]_208
DHES_HUMAN                        1.8e-10  81_[2]_234
BUDC_KLETE                        3.3e-10  77_[2]_152
AP27_MOUSE                        3.8e-10  74_[2]_158
HMTR_LEIMA                        6.5e-10  100_[2]_175
BDH_HUMAN                         1.2e-09  135_[2]_196
BPHB_PSEPS                        2.5e-09  76_[2]_187
GUTD_ECOLI                        3.4e-09  79_[2]_168
PCR_PEA                           3.6e-09  162_[2]_225
ENTA_ECOLI                        3.8e-09  70_[2]_166
ADH_DROME                         7.6e-09  83_[2]_160
FIXR_BRAJA                        1.1e-08  109_[2]_157
YURA_MYXXA                        1.7e-08  87_[2]_159
DHMA_FLAS1                        4.6e-08  195_[2]_63
YINL_LISMO                        4.9e-08  80_[2]_156
DHB2_HUMAN                        1.4e-07  158_[2]_217
RIDH_KLEAE                        1.4e-07  86_[2]_151
DHB3_HUMAN                        7.4e-07  122_[2]_176
DHII_HUMAN                        1.7e-06  110_[2]_170
FABI_ECOLI                        1.4e-05  82_[2]_168
LIGD_PSEPA                        3.8e-05  82_[2]_211
RFBB_NEIGO                        9.7e-05  108_[2]_226
CSGA_MYXXA                         0.0001  109_[2]_45
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GRLDVLVNNAGI MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF GRLDVLVNNAGI width=12 seqs=33
DHCA_HUMAN               (   81) GGLDVLVNNAGI  1 
HDE_CANTR                (  394) GTIDILVNNAGI  1 
MAS1_AGRRA               (  318) GRIDGLVNNAGY  1 
BA72_EUBSP               (   84) GRLDVMINNAGI  1 
2BHD_STREX               (   79) GSVDGLVNNAGI  1 
NODG_RHIME               (   79) EGVDILVNNAGI  1 
YRTP_BACSU               (   82) GDIDILINNAGI  1 
3BHD_COMTE               (   79) GTLNVLVNNAGI  1 
HDHA_ECOLI               (   87) GKVDILVNNAGG  1 
DHGB_BACME               (   85) GKLDVMINNAGM  1 
FVT1_HUMAN               (  113) GPVDMLVNCAGM  1 
DHES_HUMAN               (   82) GRVDVLVCNAGL  1 
BUDC_KLETE               (   78) GGFNVIVNNAGI  1 
AP27_MOUSE               (   75) GPVDLLVNNAAL  1 
HMTR_LEIMA               (  101) GRCDVLVNNASS  1 
BDH_HUMAN                (  136) KGMWGLVNNAGI  1 
BPHB_PSEPS               (   77) GKIDTLIPNAGI  1 
GUTD_ECOLI               (   80) GRVDLLVYSAGI  1 
PCR_PEA                  (  163) MPLDVLINNAAV  1 
ENTA_ECOLI               (   71) ERLDALVNAAGI  1 
ADH_DROME                (   84) KTVDVLINGAGI  1 
FIXR_BRAJA               (  110) APLHALVNNAGV  1 
YURA_MYXXA               (   88) GGLDLVVANAGV  1 
DHMA_FLAS1               (  196) GPVDVTGNNTGY  1 
YINL_LISMO               (   81) GKVDAIFLNAGI  1 
DHB2_HUMAN               (  159) RGLWAVINNAGV  1 
RIDH_KLEAE               (   87) GRLDIFHANAGA  1 
DHB3_HUMAN               (  123) LEIGILVNNVGM  1 
DHII_HUMAN               (  111) GGLDMLILNHIT  1 
FABI_ECOLI               (   83) PKFDGFVHSIGF  1 
LIGD_PSEPA               (   83) QAPTLLSNTAGV  1 
RFBB_NEIGO               (  109) GTFDLLEAARAY  1 
CSGA_MYXXA               (  110) GFVTVLLHPGWV  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GRLDVLVNNAGI MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 14434 bayes= 8.19757 E= 1.8e-004 
  -199   -338   -307    -56   -474    309   -315   -489    -43   -230    -64   -264   -114    -60   -123   -287   -385   -477   -376   -414 
  -142   -319    -47    -28    -40     98   -150   -361    148   -348   -281   -170    164    -92    190    -61     97   -354   -332   -280 
  -368    126   -550   -473    127   -516   -357    141   -441    179     32   -430    -51   -371   -435   -372   -299    192   -314   -308 
  -414   -339    403   -117   -429   -262    -46   -439   -386   -471   -427      2   -454   -315   -401   -326   -126   -454    110   -370 
     6   -201   -507   -429   -239     26   -314    164   -396     72    114   -385   -418   -332   -392   -325    -67    190   -281   -270 
  -438   -283   -521   -434     22   -567   -355    -12   -412    304     81   -449   -414   -309   -381   -421   -141    -80   -308   -331 
  -198   -134   -379   -169   -106   -249    -31    129   -344   -160   -217   -356   -331   -311   -321   -175   -185    300   -329   -358 
  -196    -35   -224   -403   -366   -409     54   -336   -311   -218   -360    433   -192   -233   -351   -183   -268   -415   -291   -137 
  -222    -17   -233   -413   -379   -265    -81   -349   -321   -439   -372    435   -176   -243   -360    -85   -169   -426   -301   -343 
   280    -64   -390   -343   -321   -160    -21   -145   -343   -321   -260   -348   -436   -313   -143   -102   -118   -123   -309   -359 
   -93   -336   -318   -380   -488    323   -343   -172   -362   -551   -453   -275   -428   -377   -366   -143   -412   -492     75   -432 
  -191   -214   -453   -410    -48   -202   -325    306   -372    -32    129   -365   -415   -327   -386   -132   -100    101   -286    116 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GRLDVLVNNAGI MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 33 E= 1.8e-004 
 0.030303  0.000000  0.000000  0.060606  0.000000  0.696970  0.000000  0.000000  0.060606  0.030303  0.030303  0.000000  0.030303  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.030303  0.000000  0.030303  0.030303  0.030303  0.212121  0.000000  0.000000  0.151515  0.000000  0.000000  0.000000  0.151515  0.000000  0.212121  0.030303  0.121212  0.000000  0.000000  0.000000 
 0.000000  0.030303  0.000000  0.000000  0.090909  0.000000  0.000000  0.151515  0.000000  0.333333  0.030303  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000 
 0.000000  0.000000  0.757576  0.000000  0.000000  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.060606  0.000000 
 0.121212  0.000000  0.000000  0.000000  0.000000  0.121212  0.000000  0.181818  0.000000  0.151515  0.060606  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.333333  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000  0.060606  0.000000  0.727273  0.060606  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.060606  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.030303  0.030303  0.030303  0.030303  0.242424  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.575758  0.000000  0.000000 
 0.090909  0.030303  0.000000  0.000000  0.000000  0.000000  0.060606  0.000000  0.000000  0.060606  0.000000  0.696970  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303 
 0.060606  0.030303  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.757576  0.030303  0.000000  0.000000  0.060606  0.030303  0.000000  0.000000  0.000000 
 0.818182  0.000000  0.000000  0.000000  0.000000  0.030303  0.030303  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.030303  0.030303  0.000000  0.000000 
 0.090909  0.000000  0.000000  0.000000  0.000000  0.818182  0.000000  0.030303  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.030303  0.000000  0.000000  0.030303  0.000000 
 0.030303  0.000000  0.000000  0.000000  0.030303  0.030303  0.000000  0.424242  0.000000  0.060606  0.090909  0.000000  0.000000  0.000000  0.000000  0.030303  0.030303  0.181818  0.000000  0.090909 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GRLDVLVNNAGI MEME-2 regular expression
--------------------------------------------------------------------------------
G[GR][LV]DVL[VI]NNAGI
--------------------------------------------------------------------------------




Time  0.59 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       8.01e-15  7_[1(5.65e-10)]_59_[2(6.43e-12)]_\
    165
3BHD_COMTE                       1.09e-14  7_[1(3.36e-10)]_59_[2(1.51e-11)]_\
    163
ADH_DROME                        4.28e-08  7_[1(4.52e-06)]_64_[2(7.57e-09)]_32_\
    [2(7.51e-05)]_116
AP27_MOUSE                       8.73e-14  8_[1(1.21e-10)]_54_[2(3.83e-10)]_\
    158
BA72_EUBSP                       1.13e-14  7_[1(9.19e-10)]_64_[2(5.89e-12)]_49_\
    [1(2.11e-05)]_4_[1(3.14e-05)]_77
BDH_HUMAN                        1.23e-11  56_[1(3.04e-09)]_67_[2(1.25e-09)]_\
    196
BPHB_PSEPS                       1.51e-12  6_[1(2.69e-10)]_58_[2(2.54e-09)]_\
    187
BUDC_KLETE                       1.31e-14  3_[1(2.06e-11)]_62_[2(3.28e-10)]_\
    152
DHES_HUMAN                       3.87e-18  3_[1(4.89e-15)]_66_[2(1.76e-10)]_42_\
    [1(1.08e-05)]_180
DHGB_BACME                       4.21e-13  8_[1(4.29e-09)]_64_[2(4.73e-11)]_\
    166
DHII_HUMAN                       1.91e-10  35_[1(5.43e-11)]_63_[2(1.67e-06)]_\
    170
DHMA_FLAS1                       3.60e-11  15_[1(4.15e-10)]_57_[2(1.52e-05)]_\
    99_[2(4.56e-08)]_63
ENTA_ECOLI                       2.86e-13  6_[1(3.96e-11)]_52_[2(3.85e-09)]_\
    166
FIXR_BRAJA                       4.79e-11  37_[1(2.12e-09)]_60_[2(1.13e-08)]_\
    157
GUTD_ECOLI                       1.10e-09  3_[1(2.15e-07)]_64_[2(3.35e-09)]_\
    168
HDE_CANTR                        3.18e-15  9_[1(2.16e-10)]_68_[2(1.08e-09)]_\
    222_[1(5.65e-10)]_58_[2(4.82e-13)]_126_[1(8.96e-05)]_363
HDHA_ECOLI                       3.35e-14  12_[1(5.65e-10)]_62_[2(2.80e-11)]_\
    157
LIGD_PSEPA                       4.71e-07  7_[1(7.72e-09)]_63_[2(3.85e-05)]_\
    211
NODG_RHIME                       1.42e-13  7_[1(6.54e-09)]_59_[2(1.17e-11)]_43_\
    [1(6.18e-05)]_100
RIDH_KLEAE                       7.89e-11  15_[1(3.74e-10)]_59_[2(1.35e-07)]_\
    151
YINL_LISMO                       4.94e-13  6_[1(5.52e-12)]_62_[2(4.85e-08)]_\
    156
YRTP_BACSU                       3.82e-15  7_[1(1.55e-10)]_62_[2(1.27e-11)]_\
    145
CSGA_MYXXA                       1.02e-11  10_[2(5.26e-12)]_144
DHB2_HUMAN                       3.77e-10  83_[1(7.59e-10)]_63_[2(1.35e-07)]_\
    217
DHB3_HUMAN                       1.37e-09  49_[1(8.36e-10)]_61_[2(7.43e-07)]_\
    176
DHCA_HUMAN                       2.57e-17  5_[1(3.37e-11)]_63_[2(2.53e-13)]_\
    184
FABI_ECOLI                       1.51e-05  7_[1(1.12e-06)]_63_[2(1.45e-05)]_\
    168
FVT1_HUMAN                       3.09e-14  33_[1(8.33e-11)]_67_[2(1.01e-10)]_\
    208
HMTR_LEIMA                       5.90e-12  7_[1(3.94e-09)]_81_[2(6.49e-10)]_\
    175
MAS1_AGRRA                       2.52e-12  246_[1(7.12e-08)]_59_[2(5.26e-12)]_\
    147
PCR_PEA                          1.83e-12  87_[1(1.07e-10)]_63_[2(3.59e-09)]_\
    225
RFBB_NEIGO                       8.94e-07  7_[1(4.67e-09)]_89_[2(9.74e-05)]_\
    226
YURA_MYXXA                       1.14e-07  87_[2(1.66e-08)]_18_[1(5.64e-06)]_\
    129
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-iMac.local

********************************************************************************
