********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.3 (Release date: Sat Jun 10 16:19:38 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= Primary sequences shuffled preserving 2-mers
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

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COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -p 4 -nsites 27 common/adh.s -oc results/meme46 -mod anr -protein -nmotifs 2 -objfun nz -w 12 -hsfrac 0.5 -shuf 2 -nostatus 

model:  mod=           anr    nmotifs=         2    evt=           inf
objective function:           em=       Noise-injected mHG
                              starts=   log likelihood ratio (LLR)
width:  minw=           12    maxw=           12
nsites: minsites=       27    maxsites=       27    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=           74865    maxiter=        50
        distance=    1e-05
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=        0.5
        searchsize=   9996    norand=         no    csites=         -1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.112 C 0.0116 D 0.0518 E 0.0549 F 0.036 G 0.0888 H 0.0178 I 0.0589 K 0.0527 
L 0.0912 M 0.0255 N 0.0413 P 0.0407 Q 0.0306 R 0.0484 S 0.061 T 0.0574 V 0.0821 
W 0.0103 Y 0.0266 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF LGRVDVLVNNAG MEME-1	width =  12  sites =  27  llr = 563  p-value = 3.8e-003  E-value = 3.8e-003
********************************************************************************
--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :::::1::1:a1
pos.-specific     C  ::::::::::::
probability       D  ::::9:::::::
matrix            E  11::::::::::
                  F  2:::::::::::
                  G  :81::1:::::9
                  H  ::::1:::::::
                  I  :::1:213::::
                  K  ::1:::::::::
                  L  3::3:17:::::
                  M  ::::::1:::::
                  N  ::::1:::89::
                  P  ::2:::::::::
                  Q  ::::::::::::
                  R  ::3:::::::::
                  S  ::::::::::::
                  T  1:1:::::::::
                  V  :::4:4:6::::
                  W  ::::::::::::
                  Y  1:::::::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0     *       
Entropy          3.4     *   **  
(30.1 bits)      2.7  *  *  *****
                 2.0  * ** ******
                 1.3 ************
                 0.7 ************
                 0.0 ------------

Multilevel           LGRVDVLVNNAG
consensus            F PL   I    
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
DHCA_HUMAN                   80  4.56e-13 RALRDFLRKE YGGLDVLVNNAG IAFKVADPTP
HDE_CANTR                   393  8.26e-13 EAIIKNVIDK YGTIDILVNNAG ILRDRSFAKM
CSGA_MYXXA                   10  1.14e-12  MRAFATNVC TGPVDVLINNAG VSGLWCALGD
HDHA_ECOLI                   86  1.29e-12 SALADFAISK LGKVDILVNNAG GGGPKPFDMP
BA72_EUBSP                   83  1.97e-12 MAAVGQVAQK YGRLDVMINNAG ITSNNVFSRV
MAS1_AGRRA                  317  3.74e-12 AAWVTAAVEK FGRIDGLVNNAG YGEPVNLDKH
DHGB_BACME                   84  5.51e-12 INLVQSAIKE FGKLDVMINNAG MENPVSSHEM
2BHD_STREX                   78  1.70e-11 QRVVAYAREE FGSVDGLVNNAG ISTGMFLETE
HMTR_LEIMA                  100  1.86e-11 AELVAACYTH WGRCDVLVNNAS SFYPTPLLRN
YRTP_BACSU                   81  2.89e-11 NQAVAQVKEQ LGDIDILINNAG ISKFGGFLDL
3BHD_COMTE                   78  3.43e-11 TLVMAAVQRR LGTLNVLVNNAG ILLPGDMETG
DHES_HUMAN                   81  4.47e-11 SVAAARERVT EGRVDVLVCNAG LGLLGPLEAL
NODG_RHIME                   78  6.86e-11 KALGQRAEAD LEGVDILVNNAG ITKDGLFLHM
FVT1_HUMAN                  112  7.45e-11 ENVIKQAQEK LGPVDMLVNCAG MAVSGKFEDL
HDE_CANTR                    89  1.14e-10 DKIVETAVKN FGTVHVIINNAG ILRDASMKKM
AP27_MOUSE                   74  2.41e-10 WDATEKALGG IGPVDLLVNNAA LVIMQPFLEV
BUDC_KLETE                   77  1.24e-09 FAAVEQARKA LGGFNVIVNNAG IAPSTPIESI
BPHB_PSEPS                   76  1.43e-09 KQAASRCVAR FGKIDTLIPNAG IWDYSTALVD
PCR_PEA                     162  1.66e-09 RQFVDNFRRS EMPLDVLINNAA VYFPTAKEPS
GUTD_ECOLI                   79  4.23e-09 LALSRGVDEI FGRVDLLVYSAG IAKAAFISDF
ADH_DROME                    83  8.47e-09 TKLLKTIFAQ LKTVDVLINGAG ILDDHQIERT
DHMA_FLAS1                  195  1.27e-08 RHGILVNMIA PGPVDVTGNNTG YSEPRLAEQV
FIXR_BRAJA                  109  1.66e-08 AITEVKKRLA GAPLHALVNNAG VSPKTPTGDR
RIDH_KLEAE                   86  1.78e-08 DNLLQGILQL TGRLDIFHANAG AYIGGPVAEG
ENTA_ECOLI                   70  1.78e-08 AQVCQRLLAE TERLDALVNAAG ILRMGATDQL
YINL_LISMO                   80  2.17e-08 KKLVELAIER YGKVDAIFLNAG IMPNSPLSAL
YURA_MYXXA                   87  1.21e-07 LERIRALDAE AGGLDLVVANAG VGGTTNAKRL
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
DHCA_HUMAN                        4.6e-13  79_[1]_185
HDE_CANTR                         1.1e-10  88_[1]_292_[1]_502
CSGA_MYXXA                        1.1e-12  9_[1]_145
HDHA_ECOLI                        1.3e-12  85_[1]_158
BA72_EUBSP                          2e-12  82_[1]_155
MAS1_AGRRA                        3.7e-12  316_[1]_148
DHGB_BACME                        5.5e-12  83_[1]_167
2BHD_STREX                        1.7e-11  77_[1]_166
HMTR_LEIMA                        1.9e-11  99_[1]_176
YRTP_BACSU                        2.9e-11  80_[1]_146
3BHD_COMTE                        3.4e-11  77_[1]_164
DHES_HUMAN                        4.5e-11  80_[1]_235
NODG_RHIME                        6.9e-11  77_[1]_156
FVT1_HUMAN                        7.4e-11  111_[1]_209
AP27_MOUSE                        2.4e-10  73_[1]_159
BUDC_KLETE                        1.2e-09  76_[1]_153
BPHB_PSEPS                        1.4e-09  75_[1]_188
PCR_PEA                           1.7e-09  161_[1]_226
GUTD_ECOLI                        4.2e-09  78_[1]_169
ADH_DROME                         8.5e-09  82_[1]_161
DHMA_FLAS1                        1.3e-08  194_[1]_64
FIXR_BRAJA                        1.7e-08  108_[1]_158
RIDH_KLEAE                        1.8e-08  85_[1]_152
ENTA_ECOLI                        1.8e-08  69_[1]_167
YINL_LISMO                        2.2e-08  79_[1]_157
YURA_MYXXA                        1.2e-07  86_[1]_160
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF LGRVDVLVNNAG width=12 seqs=27
DHCA_HUMAN               (   80) YGGLDVLVNNAG  1 
HDE_CANTR                (  393) YGTIDILVNNAG  1 
CSGA_MYXXA               (   10) TGPVDVLINNAG  1 
HDHA_ECOLI               (   86) LGKVDILVNNAG  1 
BA72_EUBSP               (   83) YGRLDVMINNAG  1 
MAS1_AGRRA               (  317) FGRIDGLVNNAG  1 
DHGB_BACME               (   84) FGKLDVMINNAG  1 
2BHD_STREX               (   78) FGSVDGLVNNAG  1 
HMTR_LEIMA               (  100) WGRCDVLVNNAS  1 
YRTP_BACSU               (   81) LGDIDILINNAG  1 
3BHD_COMTE               (   78) LGTLNVLVNNAG  1 
DHES_HUMAN               (   81) EGRVDVLVCNAG  1 
NODG_RHIME               (   78) LEGVDILVNNAG  1 
FVT1_HUMAN               (  112) LGPVDMLVNCAG  1 
HDE_CANTR                (   89) FGTVHVIINNAG  1 
AP27_MOUSE               (   74) IGPVDLLVNNAA  1 
BUDC_KLETE               (   77) LGGFNVIVNNAG  1 
BPHB_PSEPS               (   76) FGKIDTLIPNAG  1 
PCR_PEA                  (  162) EMPLDVLINNAA  1 
GUTD_ECOLI               (   79) FGRVDLLVYSAG  1 
ADH_DROME                (   83) LKTVDVLINGAG  1 
DHMA_FLAS1               (  195) PGPVDVTGNNTG  1 
FIXR_BRAJA               (  109) GAPLHALVNNAG  1 
RIDH_KLEAE               (   86) TGRLDIFHANAG  1 
ENTA_ECOLI               (   70) TERLDALVNAAG  1 
YINL_LISMO               (   80) YGKVDAIFLNAG  1 
YURA_MYXXA               (   87) AGGLDLVVANAG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 14434 bayes= 8.9365 E= 3.8e-003 
  -137   -164   -392     12    241   -148   -122    -27   -317    123   -158   -313    -39   -267   -318   -261     72   -183    166    273 
  -190   -324   -302    -54   -473    323   -327   -492   -127   -536    -59   -259   -413   -361   -350   -282   -399   -478   -364   -417 
  -320   -354    -25   -185   -411     54   -178   -412    149   -396   -333   -165    223   -127    222    -51    124   -406   -374   -323 
  -488    153   -692   -632      6   -683   -548    145   -610    181   -263   -595   -605   -538   -614   -555   -418    237   -463   -459 
  -406   -330    408   -109   -420   -420     45   -431   -378   -463   -419     11   -446   -307   -392   -318   -383   -446   -367   -362 
   -17   -164   -449   -386   -225    -63   -284    153   -364     19     39   -358   -375   -307   -354   -304    -52    244   -269   -264 
  -424   -269   -508   -422    -33   -553   -342     44   -399    302     97   -436   -401   -296   -368   -407   -125   -125   -294   -318 
  -242   -164   -424   -381    -42   -185     38    187   -377   -232   -216   -382   -370   -337   -359   -339   -219    291   -326   -326 
  -238    -32   -218   -399   -362   -402    -64   -331   -305   -284   -356    437   -188   -227   -345   -175   -261   -412   -285   -134 
  -285    -11   -224   -404   -370   -259    -72   -340   -312   -431   -364    440   -372   -234   -352   -120   -265   -418   -293   -334 
   306   -243   -595   -577   -547   -395   -521   -548   -586   -564   -498   -497   -479   -489   -556   -262    -55   -434   -526   -572 
  -113   -316   -316   -377   -482    328   -340   -500   -360   -543   -446   -271   -418   -371   -363   -120   -393   -479   -376   -428 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 3.8e-003 
 0.037037  0.000000  0.000000  0.074074  0.222222  0.037037  0.000000  0.037037  0.000000  0.259259  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.111111  0.000000  0.037037  0.148148 
 0.037037  0.000000  0.000000  0.074074  0.000000  0.814815  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.000000  0.000000  0.148148  0.000000  0.000000  0.148148  0.000000  0.000000  0.000000  0.222222  0.000000  0.259259  0.037037  0.148148  0.000000  0.000000  0.000000 
 0.000000  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.148148  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.444444  0.000000  0.000000 
 0.000000  0.000000  0.851852  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.111111  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.185185  0.000000  0.111111  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.444444  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.111111  0.000000  0.703704  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.037037  0.296296  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.592593  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.777778  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037 
 0.037037  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.851852  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000 
 0.962963  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000 
 0.074074  0.000000  0.000000  0.000000  0.000000  0.888889  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif LGRVDVLVNNAG MEME-1 regular expression
--------------------------------------------------------------------------------
[LF]G[RP][VL]DVL[VI]NNAG
--------------------------------------------------------------------------------




Time  0.47 secs.

********************************************************************************


********************************************************************************
MOTIF VLVTGAGSGIGK MEME-2	width =  12  sites =  27  llr = 552  p-value = 3.4e-003  E-value = 3.4e-003
********************************************************************************
--------------------------------------------------------------------------------
	Motif VLVTGAGSGIGK MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  4::::531::::
pos.-specific     C  :::::1::::::
probability       D  ::::::1:::::
matrix            E  ::::::::::::
                  F  :::::::::::1
                  G  ::::a3319:a:
                  H  :::::::::::1
                  I  135::::::6::
                  K  :::::::2:::3
                  L  :5:::::::3:2
                  M  ::::::::::::
                  N  ::::::1:::::
                  P  ::::::::::::
                  Q  ::::::::::::
                  R  :::::::2:::2
                  S  :::::133::::
                  T  :::a::::::::
                  V  415::::::1::
                  W  ::::::::::::
                  Y  ::::::::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0    *        
Entropy          3.4    **   * * 
(29.5 bits)      2.7   ***   *** 
                 2.0 ******  ****
                 1.3 ************
                 0.7 ************
                 0.0 ------------

Multilevel           VLITGAGSGIGK
consensus            AIV  GA  L R
sequence                   S     
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VLVTGAGSGIGK MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
DHES_HUMAN                    5  2.52e-12       ARTV VLITGCSSGIGL HLAVRLASDP
YINL_LISMO                    8  3.95e-12    MTIKNKV IIITGASSGIGK ATALLLAEKG
DHII_HUMAN                   37  5.58e-12 FRPEMLQGKK VIVTGASKGIGR EMAYHLAKMG
YRTP_BACSU                    9  1.14e-11   MQSLQHKT ALITGGGRGIGR ATALALAKEG
FVT1_HUMAN                   35  1.57e-11 PKPLALPGAH VVVTGGSSGIGK CIAIECYKQG
AP27_MOUSE                   10  1.57e-11  MKLNFSGLR ALVTGAGKGIGR DTVKALHASG
BUDC_KLETE                    5  2.82e-11       MQKV ALVTGAGQGIGK AIALRLVKDG
BPHB_PSEPS                    8  4.80e-11    MKLKGEA VLITGGASGLGR ALVDRFVAEA
HDHA_ECOLI                   14  7.68e-11 SDNLRLDGKC AIITGAGAGIGK EIAITFATAG
ENTA_ECOLI                    8  9.62e-11    MDFSGKN VWVTGAGKGIGY ATALAFVEAG
HDE_CANTR                    11  1.19e-10 MSPVDFKDKV VIITGAGGGLGK YYSLEFAKLG
DHCA_HUMAN                    7  1.46e-10     SSGIHV ALVTGGNKGIGL AIVRDLCRLF
HDE_CANTR                   325  1.46e-10 APTVSLKDKV VLITGAGAGLGK EYAKWFAKYG
DHB3_HUMAN                   51  1.78e-10 KSFLRSMGQW AVITGAGDGIGK AYSFELAKRG
DHMA_FLAS1                   17  1.97e-10 RRPGRLAGKA AIVTGAAGGIGR ATVEAYLREG
PCR_PEA                      89  2.17e-10 EGKKTLRKGN VVITGASSGLGL ATAKALAESG
DHB2_HUMAN                   85  2.62e-10 QELLPVDQKA VLVTGGDCGLGH ALCKYLDELG
BDH_HUMAN                    58  6.71e-10 SAAEPVGSKA VLVTGCDSGFGF SLAKHLHSKG
FIXR_BRAJA                   39  8.52e-10 ARVDRGEPKV MLLTGASRGIGH ATAKLFSEAG
RIDH_KLEAE                   17  1.07e-09 SMNTSLSGKV AAITGAASGIGL ECARTLLGAG
DHGB_BACME                   10  1.25e-09  MYKDLEGKV VVITGSSTGLGK SMAIRFATEK
3BHD_COMTE                    9  1.25e-09   TNRLQGKV ALVTGGASGVGL EVVKLLLGEG
2BHD_STREX                    9  1.25e-09   MNDLSGKT VIITGGARGLGA EAARQAVAAG
BA72_EUBSP                    9  1.93e-09   MNLVQDKV TIITGGTRGIGF AAAKIFIDNG
HMTR_LEIMA                    9  3.64e-09   MTAPTVPV ALVTGAAKRLGR SIAEGLHAEG
RFBB_NEIGO                    9  2.10e-08   MQTEGKKN ILVTGGAGFIGS AVVRHIIQNT
MAS1_AGRRA                  248  2.39e-08 WTVEIHQSPV ILVSGSNRGVGK AIAEDLIAHG
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VLVTGAGSGIGK MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
DHES_HUMAN                        2.5e-12  4_[2]_311
YINL_LISMO                          4e-12  7_[2]_229
DHII_HUMAN                        5.6e-12  36_[2]_244
YRTP_BACSU                        1.1e-11  8_[2]_218
FVT1_HUMAN                        1.6e-11  34_[2]_286
AP27_MOUSE                        1.6e-11  9_[2]_223
BUDC_KLETE                        2.8e-11  4_[2]_225
BPHB_PSEPS                        4.8e-11  7_[2]_256
HDHA_ECOLI                        7.7e-11  13_[2]_230
ENTA_ECOLI                        9.6e-11  7_[2]_229
HDE_CANTR                         1.2e-10  10_[2]_302_[2]_570
DHCA_HUMAN                        1.5e-10  6_[2]_258
DHB3_HUMAN                        1.8e-10  50_[2]_248
DHMA_FLAS1                          2e-10  16_[2]_242
PCR_PEA                           2.2e-10  88_[2]_299
DHB2_HUMAN                        2.6e-10  84_[2]_291
BDH_HUMAN                         6.7e-10  57_[2]_274
FIXR_BRAJA                        8.5e-10  38_[2]_228
RIDH_KLEAE                        1.1e-09  16_[2]_221
DHGB_BACME                        1.2e-09  9_[2]_241
3BHD_COMTE                        1.2e-09  8_[2]_233
2BHD_STREX                        1.2e-09  8_[2]_235
BA72_EUBSP                        1.9e-09  8_[2]_229
HMTR_LEIMA                        3.6e-09  8_[2]_267
RFBB_NEIGO                        2.1e-08  8_[2]_326
MAS1_AGRRA                        2.4e-08  247_[2]_217
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VLVTGAGSGIGK MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF VLVTGAGSGIGK width=12 seqs=27
DHES_HUMAN               (    5) VLITGCSSGIGL  1 
YINL_LISMO               (    8) IIITGASSGIGK  1 
DHII_HUMAN               (   37) VIVTGASKGIGR  1 
YRTP_BACSU               (    9) ALITGGGRGIGR  1 
FVT1_HUMAN               (   35) VVVTGGSSGIGK  1 
AP27_MOUSE               (   10) ALVTGAGKGIGR  1 
BUDC_KLETE               (    5) ALVTGAGQGIGK  1 
BPHB_PSEPS               (    8) VLITGGASGLGR  1 
HDHA_ECOLI               (   14) AIITGAGAGIGK  1 
ENTA_ECOLI               (    8) VWVTGAGKGIGY  1 
HDE_CANTR                (   11) VIITGAGGGLGK  1 
DHCA_HUMAN               (    7) ALVTGGNKGIGL  1 
HDE_CANTR                (  325) VLITGAGAGLGK  1 
DHB3_HUMAN               (   51) AVITGAGDGIGK  1 
DHMA_FLAS1               (   17) AIVTGAAGGIGR  1 
PCR_PEA                  (   89) VVITGASSGLGL  1 
DHB2_HUMAN               (   85) VLVTGGDCGLGH  1 
BDH_HUMAN                (   58) VLVTGCDSGFGF  1 
FIXR_BRAJA               (   39) MLLTGASRGIGH  1 
RIDH_KLEAE               (   17) AAITGAASGIGL  1 
DHGB_BACME               (   10) VVITGSSTGLGK  1 
3BHD_COMTE               (    9) ALVTGGASGVGL  1 
2BHD_STREX               (    9) VIITGGARGLGA  1 
BA72_EUBSP               (    9) TIITGGTRGIGF  1 
HMTR_LEIMA               (    9) ALVTGAAKRLGR  1 
RFBB_NEIGO               (    9) ILVTGGAGFIGS  1 
MAS1_AGRRA               (  248) ILVSGSNRGVGK  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VLVTGAGSGIGK MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 14434 bayes= 8.9365 E= 3.4e-003 
   162   -293   -641   -583   -376   -626   -507    112   -561   -301     44   -544   -566   -512   -571   -492    -58    239   -471   -444 
  -154   -288   -610   -535   -265   -589   -426    211   -506    244   -192   -500   -512   -424   -496   -449   -359     83    179   -365 
  -516   -344   -733   -700   -446   -764   -725    305   -693   -107   -354   -666   -680   -675   -744   -653   -446    251   -644   -576 
  -369   -263   -460   -490   -463   -501   -394   -384   -411   -493   -356   -292   -450   -350   -422    -24    398   -379   -434   -481 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
   220    256   -629   -624   -590    184   -549   -606   -640   -618   -543   -505   -467   -505   -587     33   -349   -480   -566   -611 
   114   -392     67   -325   -570    163   -271   -641   -357   -632   -591    104   -446   -312   -438    196    -54   -598   -556   -461 
   -53    131    -25   -118   -337      7   -130   -341    171   -328   -261   -150   -277     66    169    197    -37   -334   -312   -260 
  -315   -326   -306   -368    -94    332   -330   -495   -350   -538   -441   -262   -416   -365   -120   -285   -402   -482   -366   -416 
  -525   -368   -648   -621      0   -701   -555    335   -588    160   -204   -583   -606   -517   -604   -570   -444      8   -430   -441 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
  -135   -322   -273   -193     84   -401    187   -340    255     82   -288   -217   -342   -117    203    -56   -248   -348   -338     33 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VLVTGAGSGIGK MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 3.4e-003 
 0.370370  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.444444  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.259259  0.000000  0.518519  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.148148  0.037037  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.481481  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.481481  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.962963  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.518519  0.074074  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.259259  0.000000  0.074074  0.000000  0.000000  0.296296  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.259259  0.037037  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.037037  0.000000  0.000000  0.111111  0.000000  0.000000  0.185185  0.000000  0.000000  0.000000  0.000000  0.037037  0.185185  0.296296  0.037037  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.925926  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.592593  0.000000  0.296296  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.074074  0.000000  0.074074  0.000000  0.333333  0.185185  0.000000  0.000000  0.000000  0.000000  0.222222  0.037037  0.000000  0.000000  0.000000  0.037037 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VLVTGAGSGIGK MEME-2 regular expression
--------------------------------------------------------------------------------
[VA][LI][IV]TG[AG][GAS]SG[IL]G[KR]
--------------------------------------------------------------------------------




Time  0.83 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       4.45e-14  8_[2(1.25e-09)]_57_[1(1.70e-11)]_\
    166
3BHD_COMTE                       8.69e-14  8_[2(1.25e-09)]_57_[1(3.43e-11)]_\
    164
ADH_DROME                        3.50e-06  82_[1(8.47e-09)]_161
AP27_MOUSE                       7.62e-15  9_[2(1.57e-11)]_52_[1(2.41e-10)]_\
    159
BA72_EUBSP                       8.01e-15  8_[2(1.93e-09)]_62_[1(1.97e-12)]_\
    155
BDH_HUMAN                        2.60e-09  57_[2(6.71e-10)]_65_[1(1.47e-06)]_\
    197
BPHB_PSEPS                       1.63e-13  7_[2(4.80e-11)]_56_[1(1.43e-09)]_\
    188
BUDC_KLETE                       6.45e-14  4_[2(2.82e-11)]_60_[1(1.24e-09)]_\
    153
DHES_HUMAN                       4.49e-16  4_[2(2.52e-12)]_64_[1(4.47e-11)]_44_\
    [2(6.15e-05)]_179
DHGB_BACME                       1.58e-14  9_[2(1.25e-09)]_62_[1(5.51e-12)]_\
    167
DHII_HUMAN                       7.93e-10  36_[2(5.58e-12)]_61_[1(7.21e-05)]_\
    171
DHMA_FLAS1                       5.11e-12  16_[2(1.97e-10)]_55_[1(1.68e-05)]_\
    99_[1(1.27e-08)]_64
ENTA_ECOLI                       2.98e-12  7_[2(9.62e-11)]_50_[1(1.78e-08)]_\
    167
FIXR_BRAJA                       2.89e-11  38_[2(8.52e-10)]_58_[1(1.66e-08)]_\
    158
GUTD_ECOLI                       5.39e-08  4_[2(9.99e-06)]_62_[1(4.23e-09)]_\
    169
HDE_CANTR                        2.99e-15  10_[2(1.19e-10)]_66_[1(1.14e-10)]_\
    224_[2(1.46e-10)]_56_[1(8.26e-13)]_502
HDHA_ECOLI                       2.39e-16  13_[2(7.68e-11)]_60_[1(1.29e-12)]_\
    158
LIGD_PSEPA                       3.34e-04  8_[2(2.70e-07)]_285
NODG_RHIME                       1.79e-11  8_[2(1.64e-07)]_57_[1(6.86e-11)]_\
    156
RIDH_KLEAE                       3.09e-11  16_[2(1.07e-09)]_57_[1(1.78e-08)]_\
    152
YINL_LISMO                       1.64e-13  7_[2(3.95e-12)]_60_[1(2.17e-08)]_\
    157
YRTP_BACSU                       6.72e-16  8_[2(1.14e-11)]_60_[1(2.89e-11)]_\
    146
CSGA_MYXXA                       1.65e-09  9_[1(1.14e-12)]_145
DHB2_HUMAN                       2.38e-08  84_[2(2.62e-10)]_61_[1(2.99e-05)]_\
    218
DHB3_HUMAN                       3.43e-08  50_[2(1.78e-10)]_248
DHCA_HUMAN                       1.92e-16  6_[2(1.46e-10)]_61_[1(4.56e-13)]_\
    185
FABI_ECOLI                       1.49e-02  262
FVT1_HUMAN                       4.54e-15  34_[2(1.57e-11)]_65_[1(7.45e-11)]_\
    209
HMTR_LEIMA                       1.75e-13  8_[2(3.64e-09)]_79_[1(1.86e-11)]_\
    176
MAS1_AGRRA                       6.29e-13  247_[2(2.39e-08)]_57_[1(3.74e-12)]_\
    148
PCR_PEA                          1.71e-12  88_[2(2.17e-10)]_61_[1(1.66e-09)]_\
    226
RFBB_NEIGO                       3.17e-05  8_[2(2.10e-08)]_326
YURA_MYXXA                       3.13e-05  86_[1(1.21e-07)]_160
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-iMac.local

********************************************************************************
