********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.3 (Release date: Sat Jun 10 16:19:38 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= Primary sequences shuffled preserving 3-mers
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -p 4 -nsites 27 common/adh.s -oc results/meme24 -mod anr -protein -nmotifs 2 -objfun de -w 12 -hsfrac 0.6 -shuf 3 -nostatus 

model:  mod=           anr    nmotifs=         2    evt=           inf
objective function:           em=       Differential Enrichment mHG
                              starts=   log likelihood ratio (LLR)
width:  minw=           12    maxw=           12
nsites: minsites=       27    maxsites=       27    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=           49975    maxiter=        50
        distance=    1e-05
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=        0.6
        searchsize=   9996    norand=         no    csites=         -1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 
L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.0095 Y 0.027 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF KGIRVNGVAPGA MEME-1	width =  12  sites =  27  llr = 447  p-value = 2.3e-001  E-value = 2.3e-001
********************************************************************************
--------------------------------------------------------------------------------
	Motif KGIRVNGVAPGA MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  ::::::2131:2
pos.-specific     C  ::::::1:1:::
probability       D  1:::::::::::
matrix            E  ::::::::::::
                  F  :::::::::::1
                  G  :3::::4:1:71
                  H  1:::::::1:::
                  I  ::7::::31::1
                  K  21:1:::::1::
                  L  1::11::::::1
                  M  :::::::::::1
                  N  :3:1:7:::1::
                  P  :::::::::7:1
                  Q  ::::::::::::
                  R  :1:5::::::::
                  S  ::::::1:1:::
                  T  :::1:2::::::
                  V  ::3:9::5:::1
                  W  ::::::::::::
                  Y  1:::::::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4   *         
(23.9 bits)      2.7   * **   *  
                 2.0   **** * ** 
                 1.3 ******** ** 
                 0.7 ************
                 0.0 ------------

Multilevel           KGIRVNGVAPGX
consensus             NV   AI    
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KGIRVNGVAPGA MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
HDHA_ECOLI                  180  7.34e-13 VRNMAFDLGE KNIRVNGIAPGA ILTDALKSVI
2BHD_STREX                  173  2.44e-11 SKLAAVELGT DRIRVNSVHPGM TYTPMTAETG
FIXR_BRAJA                  210  2.77e-11 TRELAHDYAP HGIRVNAIAPGE IRTDMLSPDA
NODG_RHIME                  173  8.46e-11 SKSLAQEIAT RNITVNCVAPGF IESAMTDKLN
DHGB_BACME                  181  1.51e-10 TETLALEYAP KGIRVNNIGPGA INTPINAEKF
DHMA_FLAS1                  186  2.12e-10 TRAMAVDLAR HGILVNMIAPGP VDVTGNNTGY
HMTR_LEIMA                  214  3.65e-10 TRSAALELAP LQIRVNGVGPGL SVLVDDMPPA
BA72_EUBSP                  178  4.52e-10 THGLGREIIR KNIRVVGVAPGV VNTDMTNGNP
BUDC_KLETE                  173  1.69e-09 TQTAARDLAP LGITVNGFCPGI VKTPMWAEID
BPHB_PSEPS                  173  2.48e-09 LVRELAFELA PYVRVNGVGPGG MNSDMRGPSS
AP27_MOUSE                  170  4.78e-09 TKAMAMELGP HKIRVNSVNPTV VLTDMGKKVS
YURA_MYXXA                  181  6.28e-09 MESLRVDLRG TGVRVTCIYPGF VKSELTATNN
BUDC_KLETE                  107  6.88e-09 SITEEIVDRV YNINVKGVIWGM QAAVEAFKKE
HDE_CANTR                   488  1.07e-08 SKTMAIEGAK NNIKVNIVAPHA ETAMTLTIFR
3BHD_COMTE                  174  2.14e-08 AAALSCRKQG YAIRVNSIHPDG IYTPMMQASL
RIDH_KLEAE                  181  2.76e-08 VHTTRRQVAQ YGVRVGAVLPGP VVTALLDDWP
DHCA_HUMAN                  218  3.00e-08 ARKLSEQRKG DKILLNACCPGW VRTDMAGPKA
FABI_ECOLI                  180  4.52e-08 VRYMANAMGP EGVRVNAISAGP IRTLAASGIK
ENTA_ECOLI                  165  7.33e-08 ALSVGLELAG SGVRCNVVSPGS TDTDMQRTLW
ENTA_ECOLI                    6  1.86e-07      MDFSG KNVWVTGAGKGI GYATALAFVE
HDE_CANTR                   184  2.51e-07 AETLAKEGAK YNIKANAIAPLA RSRMTESILP
BA72_EUBSP                  113  3.13e-07 RVSEEEFKHI MDINVTGVFNGA WCAYQCMKDA
LIGD_PSEPA                  112  3.90e-07 KTTYDDFDWI IGVNLNGVINGM VTFVPRMIAS
YRTP_BACSU                  176  8.53e-07 TESLMQEVRK HNIRVSALTPST VASDMSIELN
DHII_HUMAN                   35  2.21e-06 EEFRPEMLQG KKVIVTGASKGI GREMAYHLAK
FABI_ECOLI                    7  2.87e-06     MGFLSG KRILVTGVASKL SIAYGIAQAM
NODG_RHIME                  234  6.19e-06 ASDHAAYVTG QTIHVNGGMAMI           
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KGIRVNGVAPGA MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
HDHA_ECOLI                        7.3e-13  179_[1]_64
2BHD_STREX                        2.4e-11  172_[1]_71
FIXR_BRAJA                        2.8e-11  209_[1]_57
NODG_RHIME                        6.2e-06  172_[1]_49_[1]
DHGB_BACME                        1.5e-10  180_[1]_70
DHMA_FLAS1                        2.1e-10  185_[1]_73
HMTR_LEIMA                        3.7e-10  213_[1]_62
BA72_EUBSP                        3.1e-07  112_[1]_53_[1]_60
BUDC_KLETE                        6.9e-09  106_[1]_54_[1]_57
BPHB_PSEPS                        2.5e-09  172_[1]_91
AP27_MOUSE                        4.8e-09  169_[1]_63
YURA_MYXXA                        6.3e-09  180_[1]_66
HDE_CANTR                         2.5e-07  183_[1]_292_[1]_407
3BHD_COMTE                        2.1e-08  173_[1]_68
RIDH_KLEAE                        2.8e-08  180_[1]_57
DHCA_HUMAN                          3e-08  217_[1]_47
FABI_ECOLI                        2.9e-06  6_[1]_161_[1]_71
ENTA_ECOLI                        1.9e-07  5_[1]_147_[1]_72
LIGD_PSEPA                        3.9e-07  111_[1]_182
YRTP_BACSU                        8.5e-07  175_[1]_51
DHII_HUMAN                        2.2e-06  34_[1]_246
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KGIRVNGVAPGA MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF KGIRVNGVAPGA width=12 seqs=27
HDHA_ECOLI               (  180) KNIRVNGIAPGA  1 
2BHD_STREX               (  173) DRIRVNSVHPGM  1 
FIXR_BRAJA               (  210) HGIRVNAIAPGE  1 
NODG_RHIME               (  173) RNITVNCVAPGF  1 
DHGB_BACME               (  181) KGIRVNNIGPGA  1 
DHMA_FLAS1               (  186) HGILVNMIAPGP  1 
HMTR_LEIMA               (  214) LQIRVNGVGPGL  1 
BA72_EUBSP               (  178) KNIRVVGVAPGV  1 
BUDC_KLETE               (  173) LGITVNGFCPGI  1 
BPHB_PSEPS               (  173) PYVRVNGVGPGG  1 
AP27_MOUSE               (  170) HKIRVNSVNPTV  1 
YURA_MYXXA               (  181) TGVRVTCIYPGF  1 
BUDC_KLETE               (  107) YNINVKGVIWGM  1 
HDE_CANTR                (  488) NNIKVNIVAPHA  1 
3BHD_COMTE               (  174) YAIRVNSIHPDG  1 
RIDH_KLEAE               (  181) YGVRVGAVLPGP  1 
DHCA_HUMAN               (  218) DKILLNACCPGW  1 
FABI_ECOLI               (  180) EGVRVNAISAGP  1 
ENTA_ECOLI               (  165) SGVRCNVVSPGS  1 
ENTA_ECOLI               (    6) KNVWVTGAGKGI  1 
HDE_CANTR                (  184) YNIKANAIAPLA  1 
BA72_EUBSP               (  113) MDINVTGVFNGA  1 
LIGD_PSEPA               (  112) IGVNLNGVINGM  1 
YRTP_BACSU               (  176) HNIRVSALTPST  1 
DHII_HUMAN               (   35) KKVIVTGASKGI  1 
FABI_ECOLI               (    7) KRILVTGVASKL  1 
NODG_RHIME               (  234) QTIHVNGGMAMI  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KGIRVNGVAPGA MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 2.3e-001 
  -245   -295     50     -5   -332   -335    273    -74    193    -47     28      8    -23     67    -14    -38    -36   -330   -308    213 
  -126   -317    -22   -138   -359    161   -145   -365    111   -351   -285    263   -295     61     57   -180    -40   -358   -334     30 
  -504   -338   -680   -657   -435   -730   -670    358   -638   -301   -329   -619   -651   -625   -688   -608   -431    183   -604   -540 
  -375   -350   -353   -260   -432   -453     92    -73     78      8   -336    126   -393   -146    331   -300     25   -401    169   -356 
  -141     71   -391   -356   -301   -464   -292    -37   -364    -95   -242   -377   -345   -335   -339   -340   -198    324   -367   -405 
  -427   -326   -205   -342   -435   -167   -137   -419    -90   -491   -430    413   -402   -257   -369    -82    104   -174   -370   -378 
    90    244   -470   -413   -273    216   -322    -32   -387   -254     47    -22   -404   -326   -390     71   -260    -77   -306   -299 
   -77    109   -418   -369    -36   -181   -284    189   -360   -111   -190   -363   -358   -315   -344   -316   -206    271   -300   -305 
   137    236   -421   -349      5     45    174     48   -323    -80     49    -28   -377   -269   -333     64    -45   -168   -251     34 
   -83   -324   -360   -333   -415   -433   -306   -411      5   -394   -396     33    415   -264   -344    -91   -305   -405    134   -441 
  -311   -323   -112   -361   -471    317      4   -490   -126   -226    -58   -257   -412   -357   -349   -130   -146   -477   -364   -415 
    60   -168   -466    -69     96    -45   -276    136   -356     -8    190   -347    123   -292   -353    -70    -40      9    176   -234 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KGIRVNGVAPGA MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 2.3e-001 
 0.000000  0.000000  0.074074  0.037037  0.000000  0.000000  0.148148  0.037037  0.222222  0.074074  0.037037  0.037037  0.037037  0.037037  0.037037  0.037037  0.037037  0.000000  0.000000  0.148148 
 0.037037  0.000000  0.037037  0.000000  0.000000  0.333333  0.000000  0.000000  0.111111  0.000000  0.000000  0.296296  0.000000  0.037037  0.074074  0.000000  0.037037  0.000000  0.000000  0.037037 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.703704  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.296296  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.074074  0.111111  0.000000  0.111111  0.000000  0.000000  0.518519  0.000000  0.074074  0.000000  0.037037  0.000000 
 0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.851852  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.666667  0.000000  0.000000  0.000000  0.037037  0.185185  0.037037  0.000000  0.000000 
 0.222222  0.074074  0.000000  0.000000  0.000000  0.444444  0.000000  0.037037  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000  0.111111  0.000000  0.037037  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.037037  0.037037  0.000000  0.296296  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.481481  0.000000  0.000000 
 0.296296  0.074074  0.000000  0.000000  0.037037  0.148148  0.074074  0.074074  0.000000  0.037037  0.037037  0.037037  0.000000  0.000000  0.000000  0.111111  0.037037  0.000000  0.000000  0.037037 
 0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.074074  0.703704  0.000000  0.000000  0.037037  0.000000  0.000000  0.037037  0.000000 
 0.000000  0.000000  0.037037  0.000000  0.000000  0.740741  0.037037  0.000000  0.037037  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000 
 0.185185  0.000000  0.000000  0.037037  0.074074  0.074074  0.000000  0.148148  0.000000  0.074074  0.111111  0.000000  0.111111  0.000000  0.000000  0.037037  0.037037  0.074074  0.037037  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KGIRVNGVAPGA MEME-1 regular expression
--------------------------------------------------------------------------------
K[GN][IV]RVN[GA][VI]APGX
--------------------------------------------------------------------------------




Time  0.42 secs.

********************************************************************************


********************************************************************************
MOTIF KEAIIKKVAEEL MEME-2	width =  12  sites =  27  llr = 247  p-value = 8.9e-001  E-value = 8.9e-001
********************************************************************************
--------------------------------------------------------------------------------
	Motif KEAIIKKVAEEL MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  ::41111:4::1
pos.-specific     C  ::::::::::::
probability       D  :1::::1::1::
matrix            E  :2:::12::22:
                  F  :::::::1::::
                  G  ::1:::::1:::
                  H  :::::::::1::
                  I  1::22::1:::1
                  K  31:::22:::1:
                  L  :::21::1:::3
                  M  ::::1::1:::1
                  N  1:::::1::21:
                  P  ::::11::::::
                  Q  11:::11::1::
                  R  3::::1::::1:
                  S  1131111:211:
                  T  :1111::1:::1
                  V  :1121::31:12
                  W  ::::::::::::
                  Y  :::::::::::1

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4             
(13.2 bits)      2.7             
                 2.0             
                 1.3 * *   ****  
                 0.7 ************
                 0.0 ------------

Multilevel           KXAIXKEVAXEL
consensus            R S   K S   
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KEAIIKKVAEEL MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
BDH_HUMAN                   253  1.44e-07 AATSLYNPES IQAIAKKMWEEL PEVVRKDYGK
HDE_CANTR                   382  5.13e-07 WPDQHDVAKD SEAIIKNVIDKY GTIDILVNNA
YRTP_BACSU                   39  2.06e-06 EGVNIGLIGR TSANVEKVAEEV KALGVKAAFA
HDE_CANTR                   103  3.60e-06 HVIINNAGIL RDASMKKMTEKD YKLVIDVHLN
DHII_HUMAN                   68  5.27e-06 GAHVVVTARS KETLQKVVSHCL ELGAASAHYI
BUDC_KLETE                   95  6.59e-06 NNAGIAPSTP IESITEEIVDRV YNINVKGVIW
ENTA_ECOLI                  211  7.62e-06 EQFKLGIPLG KIARPQEIANTI LFLASDLASH
ADH_DROME                   186  1.54e-05 TAYTVNPGIT RTTLVHKFNSWL DVEPQVAEKL
HDHA_ECOLI                  198  1.65e-05 APGAILTDAL KSVITPEIEQKM LQHTPIRRLG
DHB3_HUMAN                  240  1.76e-05 AVSTAMTKYL NTNVITKTADEF VKESLNYVTI
HMTR_LEIMA                  249  1.89e-05 GHRSKVPLYQ RDSSAAEVSDVV IFLCSSKAKY
BPHB_PSEPS                   30  1.89e-05 ALVDRFVAEA KVAVLDKSAERL AELETDLGDN
GUTD_ECOLI                  193  2.02e-05 MLGNLLKSPM FQSLLPQYATKL GIKPDQVEQY
CSGA_MYXXA                   60  2.45e-05 RVTSAMLPGL RQGALRRVAHVT SRMGSLAANT
BA72_EUBSP                  135  2.45e-05 WCAYQCMKDA KKGVIINTASVT GIFGSLSGVG
RFBB_NEIGO                  185  2.62e-05 LVRAWQRTYR LPSIVSNCSNNY GPRQFPEKLI
BA72_EUBSP                   32  2.62e-05 AAKIFIDNGA KVSIFGETQEEV DTALAQLKEL
AP27_MOUSE                  208  2.79e-05 RKLKERHPLR KFAEVEDVVNSI LFLLSDRSAS
MAS1_AGRRA                   96  3.38e-05 KNIGVCRAPA RTSVSMELANAK RFSPATFSAN
3BHD_COMTE                  192  6.25e-05 HPDGIYTPMM QASLPKGVSKEM VLHDPKLNRA
FABI_ECOLI                  218  9.41e-05 AHCEAVTPIR RTVTIEDVGNSA AFLCSDLSAG
MAS1_AGRRA                   64  1.18e-04 LVLPSHQPVS RSSTSSAMVQPI STRKKCTCKV
3BHD_COMTE                   39  1.25e-04 EGAKVAFSDI NEAAGQQLAAEL GERSMFVRHD
BA72_EUBSP                   69  1.73e-04 VLGFAPDLTS RDAVMAAVGQVA QKYGRLDVMI
AP27_MOUSE                   97  1.93e-04 VIMQPFLEVT KEAFDRSFSVNL RSVFQVSQMV
ENTA_ECOLI                  147  2.14e-04 PRIGMSAYGA SKAALKSLALSV GLELAGSGVR
DHB3_HUMAN                  176  2.38e-04 QLILKHMESR QKGLILNISSGI ALFPWPLYSM
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KEAIIKKVAEEL MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
BDH_HUMAN                         1.4e-07  252_[2]_79
HDE_CANTR                         5.1e-07  102_[2]_267_[2]_513
YRTP_BACSU                        2.1e-06  38_[2]_188
DHII_HUMAN                        5.3e-06  67_[2]_213
BUDC_KLETE                        6.6e-06  94_[2]_135
ENTA_ECOLI                        0.00021  146_[2]_52_[2]_26
ADH_DROME                         1.5e-05  185_[2]_58
HDHA_ECOLI                        1.6e-05  197_[2]_46
DHB3_HUMAN                        1.8e-05  175_[2]_52_[2]_59
HMTR_LEIMA                        1.9e-05  248_[2]_27
BPHB_PSEPS                        1.9e-05  29_[2]_234
GUTD_ECOLI                          2e-05  192_[2]_55
CSGA_MYXXA                        2.5e-05  59_[2]_95
BA72_EUBSP                        0.00017  31_[2]_25_[2]_54_[2]_103
RFBB_NEIGO                        2.6e-05  184_[2]_150
AP27_MOUSE                        2.8e-05  96_[2]_99_[2]_25
MAS1_AGRRA                        3.4e-05  63_[2]_20_[2]_369
3BHD_COMTE                        0.00012  38_[2]_141_[2]_50
FABI_ECOLI                        9.4e-05  217_[2]_33
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KEAIIKKVAEEL MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF KEAIIKKVAEEL width=12 seqs=27
BDH_HUMAN                (  253) IQAIAKKMWEEL  1 
HDE_CANTR                (  382) SEAIIKNVIDKY  1 
YRTP_BACSU               (   39) TSANVEKVAEEV  1 
HDE_CANTR                (  103) RDASMKKMTEKD  1 
DHII_HUMAN               (   68) KETLQKVVSHCL  1 
BUDC_KLETE               (   95) IESITEEIVDRV  1 
ENTA_ECOLI               (  211) KIARPQEIANTI  1 
ADH_DROME                (  186) RTTLVHKFNSWL  1 
HDHA_ECOLI               (  198) KSVITPEIEQKM  1 
DHB3_HUMAN               (  240) NTNVITKTADEF  1 
HMTR_LEIMA               (  249) RDSSAAEVSDVV  1 
BPHB_PSEPS               (   30) KVAVLDKSAERL  1 
GUTD_ECOLI               (  193) FQSLLPQYATKL  1 
CSGA_MYXXA               (   60) RQGALRRVAHVT  1 
BA72_EUBSP               (  135) KKGVIINTASVT  1 
RFBB_NEIGO               (  185) LPSIVSNCSNNY  1 
BA72_EUBSP               (   32) KVSIFGETQEEV  1 
AP27_MOUSE               (  208) KFAEVEDVVNSI  1 
MAS1_AGRRA               (   96) RTSVSMELANAK  1 
3BHD_COMTE               (  192) QASLPKGVSKEM  1 
FABI_ECOLI               (  218) RTVTIEDVGNSA  1 
MAS1_AGRRA               (   64) RSSTSSAMVQPI  1 
3BHD_COMTE               (   39) NEAAGQQLAAEL  1 
BA72_EUBSP               (   69) RDAVMAAVGQVA  1 
AP27_MOUSE               (   97) KEAFDRSFSVNL  1 
ENTA_ECOLI               (  147) SKAALKSLALSV  1 
DHB3_HUMAN               (  176) QKGLILNISSGI  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KEAIIKKVAEEL MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 8.9e-001 
  -267   -309   -211   -138    -15   -356   -144     17    233   -127   -271     81   -295    135    235     26    -40   -342   -322   -274 
  -119   -295     98    160    -17   -335   -127    -74    111   -324   -257   -148    -23    181   -158     73    119    -35   -308   -256 
   193   -215   -528   -516   -507     23   -471   -503   -522   -519   -453    -23   -458   -442   -511    211     34    -23   -491   -529 
    -6   -169   -450    -67     12   -432   -271    187   -342     96   -147    -23   -378   -282    -49     14     38    111   -246   -235 
   -54   -169    -62   -375     12   -136   -271    163   -344     69    138   -339     66     24   -346     14     38     85   -246   -235 
   -53   -296    -24    133   -333   -127     98    -74    193   -127     28   -147     63    135     57     28    -36   -330   -308   -256 
   -53   -297     50    182   -334   -127   -128   -339    193   -325   -258    166   -273    135    -14     28   -187   -117   -310   -257 
  -291    150   -471   -394     96   -436   -277    136   -360     36    190   -349   -382   -295   -355    -70     88    187   -245     41 
   215    -94   -297    -85   -306    -75   -233   -104   -223   -301   -241    -61   -363    -10   -263    121    -79     -8    113   -308 
  -119   -296    135    160   -333   -335    182   -338      8   -127   -257    195   -273    181   -159     73    -36   -117   -309   -256 
  -119    130   -184    182   -332   -127   -127   -337    143   -324   -257     82    -23    -68     57     73    -36     56    162   -256 
   -55   -167    -62   -392     13   -435   -277    136    -57    139    139   -349   -382   -295   -355   -289     38    112   -244    130 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KEAIIKKVAEEL MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 8.9e-001 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.074074  0.296296  0.037037  0.000000  0.074074  0.000000  0.074074  0.296296  0.074074  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.111111  0.185185  0.037037  0.000000  0.000000  0.037037  0.111111  0.000000  0.000000  0.000000  0.037037  0.111111  0.000000  0.111111  0.148148  0.074074  0.000000  0.000000 
 0.407407  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.296296  0.074074  0.074074  0.000000  0.000000 
 0.111111  0.000000  0.000000  0.037037  0.037037  0.000000  0.000000  0.222222  0.000000  0.185185  0.000000  0.037037  0.000000  0.000000  0.037037  0.074074  0.074074  0.185185  0.000000  0.000000 
 0.074074  0.000000  0.037037  0.000000  0.037037  0.037037  0.000000  0.185185  0.000000  0.148148  0.074074  0.000000  0.074074  0.037037  0.000000  0.074074  0.074074  0.148148  0.000000  0.000000 
 0.074074  0.000000  0.037037  0.148148  0.000000  0.037037  0.037037  0.037037  0.222222  0.037037  0.037037  0.000000  0.074074  0.074074  0.074074  0.074074  0.037037  0.000000  0.000000  0.000000 
 0.074074  0.000000  0.074074  0.222222  0.000000  0.037037  0.000000  0.000000  0.222222  0.000000  0.000000  0.148148  0.000000  0.074074  0.037037  0.074074  0.000000  0.037037  0.000000  0.000000 
 0.000000  0.037037  0.000000  0.000000  0.074074  0.000000  0.000000  0.148148  0.000000  0.111111  0.111111  0.000000  0.000000  0.000000  0.000000  0.037037  0.111111  0.333333  0.000000  0.037037 
 0.370370  0.000000  0.000000  0.037037  0.000000  0.074074  0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.222222  0.037037  0.111111  0.037037  0.000000 
 0.037037  0.000000  0.148148  0.185185  0.000000  0.000000  0.074074  0.000000  0.037037  0.037037  0.000000  0.185185  0.000000  0.111111  0.000000  0.111111  0.037037  0.037037  0.000000  0.000000 
 0.037037  0.037037  0.000000  0.222222  0.000000  0.037037  0.000000  0.000000  0.148148  0.000000  0.000000  0.074074  0.037037  0.000000  0.074074  0.111111  0.037037  0.148148  0.037037  0.000000 
 0.074074  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.148148  0.037037  0.259259  0.074074  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.185185  0.000000  0.074074 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KEAIIKKVAEEL MEME-2 regular expression
--------------------------------------------------------------------------------
[KR]X[AS]IXK[EK]V[AS]XEL
--------------------------------------------------------------------------------




Time  0.70 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       6.75e-08  172_[1(2.44e-11)]_71
3BHD_COMTE                       1.35e-06  173_[1(2.14e-08)]_6_[2(6.25e-05)]_\
    50
ADH_DROME                        1.39e-03  185_[2(1.54e-05)]_58
AP27_MOUSE                       1.43e-07  169_[1(4.78e-09)]_26_[2(2.79e-05)]_\
    25
BA72_EUBSP                       1.39e-08  31_[2(2.62e-05)]_69_[1(3.13e-07)]_\
    10_[2(2.45e-05)]_31_[1(4.52e-10)]_60
BDH_HUMAN                        1.15e-05  55_[1(4.85e-05)]_161_[1(6.74e-05)]_\
    12_[2(1.44e-07)]_79
BPHB_PSEPS                       6.68e-08  29_[2(1.89e-05)]_131_[1(2.48e-09)]_\
    91
BUDC_KLETE                       1.31e-08  94_[2(6.59e-06)]_[1(6.88e-09)]_54_\
    [1(1.69e-09)]_57
DHES_HUMAN                       1.94e-01  327
DHGB_BACME                       3.17e-07  180_[1(1.51e-10)]_70
DHII_HUMAN                       1.37e-05  34_[1(2.21e-06)]_21_[2(5.27e-06)]_\
    213
DHMA_FLAS1                       7.06e-08  185_[1(2.12e-10)]_73
ENTA_ECOLI                       5.73e-07  5_[1(1.86e-07)]_147_[1(7.33e-08)]_\
    34_[2(7.62e-06)]_26
FIXR_BRAJA                       3.26e-09  209_[1(2.77e-11)]_21_[2(7.04e-05)]_\
    24
GUTD_ECOLI                       3.19e-03  192_[2(2.02e-05)]_55
HDE_CANTR                        8.92e-08  102_[2(3.60e-06)]_69_[1(2.51e-07)]_\
    186_[2(5.13e-07)]_94_[1(1.07e-08)]_407
HDHA_ECOLI                       2.08e-11  179_[1(7.34e-13)]_6_[2(1.65e-05)]_\
    46
LIGD_PSEPA                       1.06e-03  111_[1(3.90e-07)]_182
NODG_RHIME                       6.42e-08  172_[1(8.46e-11)]_49_[1(6.19e-06)]
RIDH_KLEAE                       2.94e-05  180_[1(2.76e-08)]_57
YINL_LISMO                       1.24e-02  109_[1(1.37e-05)]_127
YRTP_BACSU                       1.56e-06  38_[2(2.06e-06)]_125_[1(8.53e-07)]_\
    51
CSGA_MYXXA                       1.42e-02  59_[2(2.45e-05)]_95
DHB2_HUMAN                       5.96e-02  252_[1(6.39e-05)]_123
DHB3_HUMAN                       6.18e-04  124_[1(3.67e-05)]_103_[2(1.76e-05)]_\
    59
DHCA_HUMAN                       3.13e-05  217_[1(3.00e-08)]_47
FABI_ECOLI                       4.28e-06  6_[1(2.87e-06)]_161_[1(4.52e-08)]_\
    26_[2(9.41e-05)]_33
FVT1_HUMAN                       2.80e-02  255_[2(6.25e-05)]_65
HMTR_LEIMA                       1.17e-08  213_[1(3.65e-10)]_23_[2(1.89e-05)]_\
    27
MAS1_AGRRA                       4.92e-02  95_[2(3.38e-05)]_369
PCR_PEA                          4.16e-01  399
RFBB_NEIGO                       3.72e-03  184_[2(2.62e-05)]_150
YURA_MYXXA                       2.11e-06  180_[1(6.28e-09)]_66
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-iMac.local

********************************************************************************
