********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.3 (Release date: Sat Jun 10 16:19:38 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= --none--
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -p 4 -nsites 27 common/adh.s -oc results/meme5 -mod zoops -protein -nmotifs 2 -objfun classic -minw 8 -nostatus 

model:  mod=         zoops    nmotifs=         2    evt=           inf
objective function:           em=       E-value of product of p-values
                              starts=   E-value of product of p-values
width:  minw=            8    maxw=           50
nsites: minsites=       27    maxsites=       27    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=           49975    maxiter=        50
        distance=    1e-05
trim:   wg=             11    ws=              1    endgaps=       yes
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=          0
        searchsize=   9996    norand=         no    csites=       1000
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 
L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.0095 Y 0.027 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF KVALVTGASSGIGKAIAKALA MEME-1	width =  21  sites =  27  llr = 811  E-value = 1.1e-117
********************************************************************************
--------------------------------------------------------------------------------
	Motif KVALVTGASSGIGKAIAKALA MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :14::::53:::::617:2:3
pos.-specific     C  :::::::1:::::::::::::
probability       D  ::::::::1:::::::::1::
matrix            E  ::::::::::::::2::11::
                  F  :::::::::::::1:::::3:
                  G  ::::::a4219:a::::::::
                  H  :::::::::::::1::::1:1
                  I  ::124::::::6:::3:1::1
                  K  61:::::::2:::3:::3:::
                  L  :::5:::::::2:2:1:1161
                  M  :::::::::::::::1:::::
                  N  :1::::::1::::::::::::
                  P  1::::::::::::::::::::
                  Q  1::::::::::::::::::::
                  R  :::::::::2:::2:::21::
                  S  :::::::133::::1::::::
                  T  :1:::a:::::::::3::1::
                  V  :4415::::::1:::12:1:1
                  W  :::::::::::::::::::::
                  Y  :::::::::::::::::::::

         bits    6.7                      
                 6.0                      
                 5.4                      
                 4.7                      
Relative         4.0      *               
Entropy          3.4      **     *        
(43.4 bits)      2.7     ***   ***        
                 2.0 * ******  *** * *  * 
                 1.3 ****************** **
                 0.7 *********************
                 0.0 ---------------------

Multilevel           KVALVTGAASGIGKAIAKXLA
consensus              VII  GS  L R TV  F 
sequence                     G            
                                          
                                          
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KVALVTGASSGIGKAIAKALA MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                    Site       
-------------             ----- ---------            ---------------------
YINL_LISMO                    6  9.09e-18      MTIKN KVIIITGASSGIGKATALLLA EKGAKLVLAA
BUDC_KLETE                    3  9.09e-18         MQ KVALVTGAGQGIGKAIALRLV KDGFAVAIAD
YRTP_BACSU                    7  5.84e-17     MQSLQH KTALITGGGRGIGRATALALA KEGVNIGLIG
DHII_HUMAN                   35  5.84e-17 EEFRPEMLQG KKVIVTGASKGIGREMAYHLA KMGAHVVVTA
DHCA_HUMAN                    5  5.63e-16       SSGI HVALVTGGNKGIGLAIVRDLC RLFSGDVVLT
ENTA_ECOLI                    6  5.63e-16      MDFSG KNVWVTGAGKGIGYATALAFV EAGAKVTGFD
BDH_HUMAN                    56  1.01e-15 YASAAEPVGS KAVLVTGCDSGFGFSLAKHLH SKGFLVFAGC
FIXR_BRAJA                   37  1.97e-15 VNARVDRGEP KVMLLTGASRGIGHATAKLFS EAGWRIISCA
HDHA_ECOLI                   12  3.05e-15 FNSDNLRLDG KCAIITGAGAGIGKEIAITFA TAGASVVVSD
RIDH_KLEAE                   15  6.37e-15 VSSMNTSLSG KVAAITGAASGIGLECARTLL GAGAKVVLID
DHES_HUMAN                    3  8.67e-15         AR TVVLITGCSSGIGLHLAVRLA SDPSQSFKVY
PCR_PEA                      87  2.12e-14 SSEGKKTLRK GNVVITGASSGLGLATAKALA ESGKWHVIMA
BA72_EUBSP                    7  2.12e-14     MNLVQD KVTIITGGTRGIGFAAAKIFI DNGAKVSIFG
DHGB_BACME                    8  3.43e-14    MYKDLEG KVVVITGSSTGLGKSMAIRFA TEKAKVVVNY
DHMA_FLAS1                   15  4.14e-14 VSRRPGRLAG KAAIVTGAAGGIGRATVEAYL REGASVVAMD
3BHD_COMTE                    7  4.14e-14     TNRLQG KVALVTGGASGVGLEVVKLLL GEGAKVAFSD
DHB2_HUMAN                   83  4.55e-14 SGQELLPVDQ KAVLVTGGDCGLGHALCKYLD ELGFTVFAGV
AP27_MOUSE                    8  4.55e-14    MKLNFSG LRALVTGAGKGIGRDTVKALH ASGAKVVAVT
FVT1_HUMAN                   33  6.59e-14 ISPKPLALPG AHVVVTGGSSGIGKCIAIECY KQGAFITLVA
BPHB_PSEPS                    6  2.10e-13      MKLKG EAVLITGGASGLGRALVDRFV AEAKVAVLDK
DHB3_HUMAN                   49  2.72e-13 LPKSFLRSMG QWAVITGAGDGIGKAYSFELA KRGLNVVLIS
HMTR_LEIMA                    7  3.83e-13     MTAPTV PVALVTGAAKRLGRSIAEGLH AEGYAVCLHY
MAS1_AGRRA                  246  5.82e-13 SHWTVEIHQS PVILVSGSNRGVGKAIAEDLI AHGYRLSLGA
NODG_RHIME                    7  6.32e-13     MFELTG RKALVTGASGAIGGAIARVLH AQGAIVGLHG
RFBB_NEIGO                    7  2.11e-12     MQTEGK KNILVTGGAGFIGSAVVRHII QNTRDSVVNL
2BHD_STREX                    7  7.65e-12     MNDLSG KTVIITGGARGLGAEAARQAV AAGARVVLAD
LIGD_PSEPA                    7  2.26e-11     MKDFQD QVAFITGGASGAGFGQAKVFG QAGAKIVVAD
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KVALVTGASSGIGKAIAKALA MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
YINL_LISMO                        9.1e-18  5_[1]_222
BUDC_KLETE                        9.1e-18  2_[1]_218
YRTP_BACSU                        5.8e-17  6_[1]_211
DHII_HUMAN                        5.8e-17  34_[1]_237
DHCA_HUMAN                        5.6e-16  4_[1]_251
ENTA_ECOLI                        5.6e-16  5_[1]_222
BDH_HUMAN                           1e-15  55_[1]_267
FIXR_BRAJA                          2e-15  36_[1]_221
HDHA_ECOLI                          3e-15  11_[1]_223
RIDH_KLEAE                        6.4e-15  14_[1]_214
DHES_HUMAN                        8.7e-15  2_[1]_304
PCR_PEA                           2.1e-14  86_[1]_292
BA72_EUBSP                        2.1e-14  6_[1]_222
DHGB_BACME                        3.4e-14  7_[1]_234
DHMA_FLAS1                        4.1e-14  14_[1]_235
3BHD_COMTE                        4.1e-14  6_[1]_226
DHB2_HUMAN                        4.5e-14  82_[1]_284
AP27_MOUSE                        4.5e-14  7_[1]_216
FVT1_HUMAN                        6.6e-14  32_[1]_279
BPHB_PSEPS                        2.1e-13  5_[1]_249
DHB3_HUMAN                        2.7e-13  48_[1]_241
HMTR_LEIMA                        3.8e-13  6_[1]_260
MAS1_AGRRA                        5.8e-13  245_[1]_210
NODG_RHIME                        6.3e-13  6_[1]_218
RFBB_NEIGO                        2.1e-12  6_[1]_319
2BHD_STREX                        7.7e-12  6_[1]_228
LIGD_PSEPA                        2.3e-11  6_[1]_278
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KVALVTGASSGIGKAIAKALA MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF KVALVTGASSGIGKAIAKALA width=21 seqs=27
YINL_LISMO               (    6) KVIIITGASSGIGKATALLLA  1 
BUDC_KLETE               (    3) KVALVTGAGQGIGKAIALRLV  1 
YRTP_BACSU               (    7) KTALITGGGRGIGRATALALA  1 
DHII_HUMAN               (   35) KKVIVTGASKGIGREMAYHLA  1 
DHCA_HUMAN               (    5) HVALVTGGNKGIGLAIVRDLC  1 
ENTA_ECOLI               (    6) KNVWVTGAGKGIGYATALAFV  1 
BDH_HUMAN                (   56) KAVLVTGCDSGFGFSLAKHLH  1 
FIXR_BRAJA               (   37) KVMLLTGASRGIGHATAKLFS  1 
HDHA_ECOLI               (   12) KCAIITGAGAGIGKEIAITFA  1 
RIDH_KLEAE               (   15) KVAAITGAASGIGLECARTLL  1 
DHES_HUMAN               (    3) TVVLITGCSSGIGLHLAVRLA  1 
PCR_PEA                  (   87) GNVVITGASSGLGLATAKALA  1 
BA72_EUBSP               (    7) KVTIITGGTRGIGFAAAKIFI  1 
DHGB_BACME               (    8) KVVVITGSSTGLGKSMAIRFA  1 
DHMA_FLAS1               (   15) KAAIVTGAAGGIGRATVEAYL  1 
3BHD_COMTE               (    7) KVALVTGGASGVGLEVVKLLL  1 
DHB2_HUMAN               (   83) KAVLVTGGDCGLGHALCKYLD  1 
AP27_MOUSE               (    8) LRALVTGAGKGIGRDTVKALH  1 
FVT1_HUMAN               (   33) AHVVVTGGSSGIGKCIAIECY  1 
BPHB_PSEPS               (    6) EAVLITGGASGLGRALVDRFV  1 
DHB3_HUMAN               (   49) QWAVITGAGDGIGKAYSFELA  1 
HMTR_LEIMA               (    7) PVALVTGAAKRLGRSIAEGLH  1 
MAS1_AGRRA               (  246) PVILVSGSNRGVGKAIAEDLI  1 
NODG_RHIME               (    7) RKALVTGASGAIGGAIARVLH  1 
RFBB_NEIGO               (    7) KNILVTGGAGFIGSAVVRHII  1 
2BHD_STREX               (    7) KTVIITGGARGLGAEAARQAV  1 
LIGD_PSEPA               (    7) QVAFITGGASGAGFGQAKVFG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KVALVTGASSGIGKAIAKALA MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 9335 bayes= 8.42937 E= 1.1e-117 
  -123   -304   -197     -9   -345   -129     97   -347    324   -128   -267   -158     63    134    -11   -174    -39   -340   -317   -266 
    22    132   -263   -193   -271   -379     85   -183     47   -250   -206    118   -315   -139    -34   -216     30    226    160   -260 
   189   -293   -643   -584   -374   -622   -506    112   -561   -300     45   -542   -567   -510   -571   -487    -58    213   -467   -440 
  -156   -255   -555   -475      6   -537   -365    181   -445    249   -149   -445   -456   -362   -431   -394   -319     73    170   -315 
  -517   -345   -738   -704   -447   -767   -730    294   -698   -107   -356   -670   -682   -680   -749   -657   -447    261   -649   -579 
  -369   -263   -460   -490   -463   -501   -394   -384   -411   -493   -356   -292   -450   -350   -422    -24    398   -379   -434   -481 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
   209    257   -632   -627   -593    199   -552   -610   -644   -622   -547   -506   -467   -507   -590     33   -350   -484   -569   -614 
   133   -389     67   -325   -569    123   -272   -639   -357   -630   -588    104   -446   -313   -437    215    -54   -594   -555   -461 
  -120    131    -25   -120   -339      7   -131   -343    171   -329   -263   -151   -278     66    169    212    -37   -335   -313   -261 
  -190   -323   -303   -365    -98    329   -328   -492   -347   -536   -438   -259   -413   -362   -122   -282   -399   -478   -364   -417 
  -233   -271   -436   -426    -80   -525   -397    352   -384     59   -119   -382   -455   -365   -425   -372   -299     49   -338   -309 
  -543   -516   -527   -593   -662    345   -530   -712   -574   -725   -665   -492   -593   -574   -569   -510   -610   -699   -553   -615 
  -124   -291   -215   -143    135   -129    183   -314    215     77   -256   -173   -296    -89    196    -45   -205   -318   -313     31 
   249    109   -102     89   -331   -140     24   -319   -301   -332   -270   -272   -410   -268   -326     45   -234   -214   -319   -352 
   -54    150   -471   -393   -204   -436   -277    207   -360     69    139   -349   -382     23   -355   -289    200      9   -245     41 
   266    134   -462   -421   -396   -304   -395   -381   -423   -399   -337   -403   -445   -376   -421    -44   -277    101   -383   -432 
  -259   -253    -34     94     -8   -358   -156     78    229     50   -222   -182   -298   -103    169   -190   -198    -98   -292     32 
    55   -290     49     56   -327   -127    234    -72   -100      6   -252   -150   -275     66    140   -165     36    -33   -306     29 
  -171    129   -563   -481    251   -564   -368    -34   -454    272   -134   -464   -459   -359   -431   -422   -350   -254   -305     22 
   124    149    -62   -380   -206   -136    277    101   -349     35   -147   -342   -380   -287   -349    -69   -222     84   -246     40 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KVALVTGASSGIGKAIAKALA MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 27 E= 1.1e-117 
 0.037037  0.000000  0.000000  0.037037  0.000000  0.037037  0.037037  0.000000  0.592593  0.037037  0.000000  0.000000  0.074074  0.074074  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000 
 0.148148  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.074074  0.000000  0.000000  0.111111  0.000000  0.000000  0.037037  0.000000  0.074074  0.444444  0.037037  0.000000 
 0.444444  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.370370  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.222222  0.000000  0.518519  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.148148  0.037037  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.444444  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.518519  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.962963  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.481481  0.074074  0.000000  0.000000  0.000000  0.370370  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.296296  0.000000  0.074074  0.000000  0.000000  0.222222  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.296296  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.037037  0.037037  0.000000  0.000000  0.111111  0.000000  0.000000  0.185185  0.000000  0.000000  0.000000  0.000000  0.037037  0.185185  0.333333  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.888889  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.629630  0.000000  0.222222  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.111111  0.037037  0.074074  0.000000  0.259259  0.185185  0.000000  0.000000  0.000000  0.000000  0.222222  0.037037  0.000000  0.000000  0.000000  0.037037 
 0.555556  0.037037  0.037037  0.185185  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.259259  0.000000  0.148148  0.074074  0.000000  0.000000  0.037037  0.000000  0.000000  0.259259  0.074074  0.000000  0.037037 
 0.703704  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.222222  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.111111  0.037037  0.000000  0.000000  0.111111  0.296296  0.148148  0.000000  0.000000  0.000000  0.000000  0.185185  0.000000  0.000000  0.037037  0.000000  0.037037 
 0.185185  0.000000  0.074074  0.074074  0.000000  0.037037  0.111111  0.037037  0.000000  0.111111  0.000000  0.000000  0.000000  0.037037  0.148148  0.000000  0.074074  0.074074  0.000000  0.037037 
 0.037037  0.037037  0.000000  0.000000  0.259259  0.000000  0.000000  0.037037  0.000000  0.592593  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037 
 0.296296  0.037037  0.037037  0.000000  0.000000  0.037037  0.148148  0.111111  0.000000  0.111111  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.148148  0.000000  0.037037 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif KVALVTGASSGIGKAIAKALA MEME-1 regular expression
--------------------------------------------------------------------------------
KV[AV][LI][VI]TG[AG][ASG]SG[IL]G[KR]A[IT][AV]KX[LF]A
--------------------------------------------------------------------------------




Time  0.89 secs.

********************************************************************************


********************************************************************************
MOTIF YSASKAAVRGLTRSLALELAP MEME-2	width =  21  sites =  27  llr = 800  E-value = 6.0e-115
********************************************************************************
--------------------------------------------------------------------------------
	Motif YSASKAAVRGLTRSLALELAP MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  :171:46111:1:215:::4:
pos.-specific     C  :1:::::::::::::::::::
probability       D  ::::::::1::::::::3:::
matrix            E  ::::::::1:::21:::6::1
                  F  :::::31:::3:::::1::::
                  G  :1:::13::4:::::1:::11
                  H  :::::::::1::1::::::::
                  I  :::::::11:::::::::1::
                  K  ::::a:::1:::2::::::11
                  L  :::::::31:7:::5:2:5::
                  M  ::1::::1:1:1::2:1::::
                  N  :::::::::::::::::::::
                  P  ::::::::::::::::::::4
                  Q  ::::::::::::1::11:::1
                  R  ::::::::1:::3::21::21
                  S  :427::::11:213:::::1:
                  T  :1:1::::1::4:1::::::1
                  V  :::::::41::2:1::1:1::
                  W  :::::1:::::::::::::::
                  Y  a:::::::::::::::::2::

         bits    6.7                      
                 6.0                      
                 5.4 *                    
                 4.7 *                    
Relative         4.0 *   *                
Entropy          3.4 *   *                
(42.8 bits)      2.7 *  **     *      *   
                 2.0 * *****   *** ** **  
                 1.3 ******** ************
                 0.7 *********************
                 0.0 ---------------------

Multilevel           YSASKAAVXGLTRSLALELAP
consensus                 FGL  FSEAMR D   
sequence                                  
                                          
                                          
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YSASKAAVRGLTRSLALELAP MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                    Site       
-------------             ----- ---------            ---------------------
BUDC_KLETE                  152  5.56e-18 GHVGNPELAV YSSSKFAVRGLTQTAARDLAP LGITVNGFCP
YRTP_BACSU                  155  3.00e-17 GQRGAAVTSA YSASKFAVLGLTESLMQEVRK HNIRVSALTP
FVT1_HUMAN                  186  1.89e-16 GQLGLFGFTA YSASKFAIRGLAEALQMEVKP YNVYITVAYP
NODG_RHIME                  152  1.89e-16 GAIGNPGQTN YCASKAGMIGFSKSLAQEIAT RNITVNCVAP
AP27_MOUSE                  149  4.45e-16 AHVTFPNLIT YSSTKGAMTMLTKAMAMELGP HKIRVNSVNP
DHES_HUMAN                  155  1.01e-15 GLMGLPFNDV YCASKFALEGLCESLAVLLLP FGVHLSLIEC
HMTR_LEIMA                  193  4.21e-15 TNQPLLGYTI YTMAKGALEGLTRSAALELAP LQIRVNGVGP
GUTD_ECOLI                  154  1.42e-14 GKVGSKHNSG YSAAKFGGVGLTQSLALDLAE YGITVHSLML
DHGB_BACME                  160  1.79e-14 WKIPWPLFVH YAASKGGMKLMTETLALEYAP KGIRVNNIGP
3BHD_COMTE                  151  1.79e-14 SWLPIEQYAG YSASKAAVSALTRAAALSCRK QGYAIRVNSI
YURA_MYXXA                  160  2.01e-14 AGFRGLPATR YSASKAFLSTFMESLRVDLRG TGVRVTCIYP
BPHB_PSEPS                  153  2.26e-14 GFYPNGGGPL YTAAKQAIVGLVRELAFELAP YVRVNGVGPG
DHB2_HUMAN                  232  3.18e-14 GGAPMERLAS YGSSKAAVTMFSSVMRLELSK WGIKVASIQP
FIXR_BRAJA                  189  4.46e-14 SRVHPFAGSA YATSKAALASLTRELAHDYAP HGIRVNAIAP
DHB3_HUMAN                  198  4.98e-14 ALFPWPLYSM YSASKAFVCAFSKALQEEYKA KEVIIQVLTP
HDE_CANTR                   467  4.98e-14 GIYGNFGQAN YSSSKAGILGLSKTMAIEGAK NNIKVNIVAP
2BHD_STREX                  152  5.56e-14 GLMGLALTSS YGASKWGVRGLSKLAAVELGT DRIRVNSVHP
YINL_LISMO                  154  6.93e-14 GLKAYPGGAV YGATKWAVRDLMEVLRMESAQ EGTNIRTATI
DHII_HUMAN                  183  1.19e-13 GKVAYPMVAA YSASKFALDGFFSSIRKEYSV SRVNVSITLC
RIDH_KLEAE                  160  1.63e-13 GVVPVIWEPV YTASKFAVQAFVHTTRRQVAQ YGVRVGAVLP
DHMA_FLAS1                  165  2.01e-13 SFMAEPEAAA YVAAKGGVAMLTRAMAVDLAR HGILVNMIAP
RFBB_NEIGO                  165  2.74e-13 ETTPYAPSSP YSASKAAADHLVRAWQRTYRL PSIVSNCSNN
HDHA_ECOLI                  159  5.54e-13 AENKNINMTS YASSKAAASHLVRNMAFDLGE KNIRVNGIAP
BDH_HUMAN                   208  6.12e-13 GRMANPARSP YCITKFGVEAFSDCLRYEMYP LGVKVSVVEP
CSGA_MYXXA                   88  1.46e-12 AANTDGGAYA YRMSKAALNMAVRSMSTDLRP EGFVTVLLHP
BA72_EUBSP                  157  4.42e-12 GIFGSLSGVG YPASKASVIGLTHGLGREIIR KNIRVVGVAP
ENTA_ECOLI                  144  8.98e-12 AHTPRIGMSA YGASKAALKSLALSVGLELAG SGVRCNVVSP
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YSASKAAVRGLTRSLALELAP MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
BUDC_KLETE                        5.6e-18  151_[2]_69
YRTP_BACSU                          3e-17  154_[2]_63
FVT1_HUMAN                        1.9e-16  185_[2]_126
NODG_RHIME                        1.9e-16  151_[2]_73
AP27_MOUSE                        4.5e-16  148_[2]_75
DHES_HUMAN                          1e-15  154_[2]_152
HMTR_LEIMA                        4.2e-15  192_[2]_74
GUTD_ECOLI                        1.4e-14  153_[2]_85
DHGB_BACME                        1.8e-14  159_[2]_82
3BHD_COMTE                        1.8e-14  150_[2]_82
YURA_MYXXA                          2e-14  159_[2]_78
BPHB_PSEPS                        2.3e-14  152_[2]_102
DHB2_HUMAN                        3.2e-14  231_[2]_135
FIXR_BRAJA                        4.5e-14  188_[2]_69
DHB3_HUMAN                          5e-14  197_[2]_92
HDE_CANTR                           5e-14  466_[2]_419
2BHD_STREX                        5.6e-14  151_[2]_83
YINL_LISMO                        6.9e-14  153_[2]_74
DHII_HUMAN                        1.2e-13  182_[2]_89
RIDH_KLEAE                        1.6e-13  159_[2]_69
DHMA_FLAS1                          2e-13  164_[2]_85
RFBB_NEIGO                        2.7e-13  164_[2]_161
HDHA_ECOLI                        5.5e-13  158_[2]_76
BDH_HUMAN                         6.1e-13  207_[2]_115
CSGA_MYXXA                        1.5e-12  87_[2]_58
BA72_EUBSP                        4.4e-12  156_[2]_72
ENTA_ECOLI                          9e-12  143_[2]_84
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YSASKAAVRGLTRSLALELAP MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF YSASKAAVRGLTRSLALELAP width=21 seqs=27
BUDC_KLETE               (  152) YSSSKFAVRGLTQTAARDLAP  1 
YRTP_BACSU               (  155) YSASKFAVLGLTESLMQEVRK  1 
FVT1_HUMAN               (  186) YSASKFAIRGLAEALQMEVKP  1 
NODG_RHIME               (  152) YCASKAGMIGFSKSLAQEIAT  1 
AP27_MOUSE               (  149) YSSTKGAMTMLTKAMAMELGP  1 
DHES_HUMAN               (  155) YCASKFALEGLCESLAVLLLP  1 
HMTR_LEIMA               (  193) YTMAKGALEGLTRSAALELAP  1 
GUTD_ECOLI               (  154) YSAAKFGGVGLTQSLALDLAE  1 
DHGB_BACME               (  160) YAASKGGMKLMTETLALEYAP  1 
3BHD_COMTE               (  151) YSASKAAVSALTRAAALSCRK  1 
YURA_MYXXA               (  160) YSASKAFLSTFMESLRVDLRG  1 
BPHB_PSEPS               (  153) YTAAKQAIVGLVRELAFELAP  1 
DHB2_HUMAN               (  232) YGSSKAAVTMFSSVMRLELSK  1 
FIXR_BRAJA               (  189) YATSKAALASLTRELAHDYAP  1 
DHB3_HUMAN               (  198) YSASKAFVCAFSKALQEEYKA  1 
HDE_CANTR                (  467) YSSSKAGILGLSKTMAIEGAK  1 
2BHD_STREX               (  152) YGASKWGVRGLSKLAAVELGT  1 
YINL_LISMO               (  154) YGATKWAVRDLMEVLRMESAQ  1 
DHII_HUMAN               (  183) YSASKFALDGFFSSIRKEYSV  1 
RIDH_KLEAE               (  160) YTASKFAVQAFVHTTRRQVAQ  1 
DHMA_FLAS1               (  165) YVAAKGGVAMLTRAMAVDLAR  1 
RFBB_NEIGO               (  165) YSASKAAADHLVRAWQRTYRL  1 
HDHA_ECOLI               (  159) YASSKAAASHLVRNMAFDLGE  1 
BDH_HUMAN                (  208) YCITKFGVEAFSDCLRYEMYP  1 
CSGA_MYXXA               (   88) YRMSKAALNMAVRSMSTDLRP  1 
BA72_EUBSP               (  157) YPASKASVIGLTHGLGREIIR  1 
ENTA_ECOLI               (  144) YGASKAALKSLALSVGLELAG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YSASKAAVRGLTRSLALELAP MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 21 n= 9335 bayes= 8.42937 E= 6.0e-115 
  -846   -613   -749   -817   -400   -738   -504   -769   -777   -706   -736   -708   -695   -681   -724   -747   -760   -803   -430    520 
    -3    295   -464   -454   -463     51   -400   -465   -415   -487   -419   -334    -30   -371    -58    276    101   -126   -451   -452 
   265    -69   -396   -350   -325   -255   -331   -119   -350   -325     58   -351   -428   -317   -355     93    -95   -202   -315   -363 
    18   -207   -452   -488   -451   -395   -399   -481   -419   -498   -419   -291   -392   -388   -412    349    105   -463   -432   -435 
  -533   -410   -566   -527   -610   -595   -434   -517    421   -585   -521   -447   -518   -440   -162   -528   -491   -610   -463   -541 
   196   -290   -583   -579    298     67   -385   -490   -556   -499   -464   -470   -490     29   -537   -311   -376   -458    288   -210 
   248   -236   -590   -578     93    144   -518   -556   -589   -569   -498   -483   -464   -482   -555    -50   -339   -436   -528   -568 
   -57   -201   -512   -436   -238   -136   -323    105   -404    141    192   -392   -423   -339   -400   -334   -260    218   -287   -277 
   -53    130     50    100   -332   -335   -127     14     68    -46   -256      8   -273     67    140     73     36    -35   -308   -256 
    26   -261    -38   -189   -319    213    179   -282   -173   -120    215   -196   -323   -142   -228     20    -47   -294   -317   -284 
  -168   -409   -739   -654    271   -744   -528   -224   -631    284     59   -652   -597   -486   -587   -628   -507   -349   -388   -425 
   -69    136   -447   -420    -10   -462   -313   -202   -366   -264    121   -294   -401   -303   -370    158    279     94   -304   -306 
  -271   -319    -28    185   -361   -359    184   -361    175   -128   -280   -172   -298    135    235     25   -212   -354   -330   -281 
    79    130   -256     32   -298   -138   -188   -263   -171   -121   -235    -11   -313   -141   -223    232    124    -31   -302   -271 
    22   -199   -498   -419   -209   -471   -307    -17   -387    234    278   -382   -404   -314   -378   -326    -54    -67    169   -263 
   217   -232   -375   -308   -445    -38   -291   -431   -215   -432     28   -313   -407    175    198    -52   -291   -368   -414   -408 
  -282   -184   -361    -55     92   -411     89    -18    -43    116    187   -285   -355    118    137   -256    -40     80   -254     39 
  -399   -665    228    338   -665   -511   -366   -554   -284   -141   -487   -353   -416     50   -421    -79    -66   -513   -628   -550 
  -299    144   -474   -395   -203   -142   -282     53   -363    227     55   -355   -383   -295   -356    -76   -230     47   -248    250 
   198   -172   -258   -188   -313     -6   -187    -77     42   -132   -244   -214   -329   -135    150     18   -212   -254   -304     11 
  -121   -298   -192     54   -338    -47   -134   -341    142   -129   -263   -156    290    133     55   -169     34   -119   -315   -264 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YSASKAAVRGLTRSLALELAP MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 21 nsites= 27 E= 6.0e-115 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000 
 0.111111  0.111111  0.000000  0.000000  0.000000  0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.407407  0.111111  0.037037  0.000000  0.000000 
 0.666667  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.185185  0.037037  0.000000  0.000000  0.000000 
 0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.740741  0.111111  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  1.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.444444  0.000000  0.000000  0.000000  0.296296  0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000 
 0.629630  0.000000  0.000000  0.000000  0.074074  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000 
 0.074074  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.111111  0.000000  0.259259  0.111111  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.407407  0.000000  0.000000 
 0.074074  0.037037  0.074074  0.111111  0.000000  0.000000  0.000000  0.074074  0.074074  0.074074  0.000000  0.037037  0.000000  0.037037  0.148148  0.111111  0.074074  0.074074  0.000000  0.000000 
 0.148148  0.000000  0.037037  0.000000  0.000000  0.444444  0.074074  0.000000  0.000000  0.037037  0.148148  0.000000  0.000000  0.000000  0.000000  0.074074  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.259259  0.000000  0.000000  0.000000  0.000000  0.666667  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.222222  0.370370  0.185185  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.222222  0.000000  0.000000  0.074074  0.000000  0.185185  0.037037  0.000000  0.000000  0.000000  0.074074  0.296296  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.222222  0.037037  0.000000  0.074074  0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.000000  0.000000  0.333333  0.148148  0.074074  0.000000  0.000000 
 0.148148  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.481481  0.222222  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.037037  0.037037  0.000000 
 0.518519  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.111111  0.222222  0.037037  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.037037  0.074074  0.000000  0.037037  0.037037  0.037037  0.222222  0.111111  0.000000  0.000000  0.074074  0.148148  0.000000  0.037037  0.148148  0.000000  0.037037 
 0.000000  0.000000  0.259259  0.592593  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.037037  0.000000  0.000000  0.000000 
 0.000000  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.074074  0.000000  0.481481  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.111111  0.000000  0.185185 
 0.444444  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.037037  0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.185185  0.074074  0.000000  0.000000  0.000000  0.037037 
 0.037037  0.000000  0.000000  0.074074  0.000000  0.074074  0.000000  0.000000  0.148148  0.037037  0.000000  0.000000  0.370370  0.074074  0.074074  0.000000  0.074074  0.037037  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YSASKAAVRGLTRSLALELAP MEME-2 regular expression
--------------------------------------------------------------------------------
YSASK[AF][AG][VL]XG[LF][TS][RE][SA][LM][AR]L[ED]LAP
--------------------------------------------------------------------------------




Time  1.57 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       1.09e-18  6_[1(7.65e-12)]_124_[2(5.56e-14)]_\
    83
3BHD_COMTE                       2.12e-21  6_[1(4.14e-14)]_123_[2(1.79e-14)]_\
    82
ADH_DROME                        1.20e-07  6_[1(1.73e-06)]_124_[2(6.29e-08)]_\
    83
AP27_MOUSE                       5.71e-23  7_[1(4.55e-14)]_120_[2(4.45e-16)]_\
    75
BA72_EUBSP                       2.35e-19  6_[1(2.12e-14)]_129_[2(4.42e-12)]_\
    72
BDH_HUMAN                        3.34e-21  55_[1(1.01e-15)]_131_[2(6.12e-13)]_\
    115
BPHB_PSEPS                       1.56e-20  5_[1(2.10e-13)]_126_[2(2.26e-14)]_\
    102
BUDC_KLETE                       1.71e-28  2_[1(9.09e-18)]_128_[2(5.56e-18)]_\
    69
DHES_HUMAN                       4.67e-23  2_[1(8.67e-15)]_131_[2(1.01e-15)]_\
    152
DHGB_BACME                       1.89e-21  7_[1(3.43e-14)]_131_[2(1.79e-14)]_\
    82
DHII_HUMAN                       2.92e-23  34_[1(5.84e-17)]_127_[2(1.19e-13)]_\
    89
DHMA_FLAS1                       2.60e-20  14_[1(4.14e-14)]_129_[2(2.01e-13)]_\
    85
ENTA_ECOLI                       1.33e-20  5_[1(5.63e-16)]_117_[2(8.98e-12)]_\
    84
FIXR_BRAJA                       3.19e-22  36_[1(1.97e-15)]_131_[2(4.46e-14)]_\
    69
GUTD_ECOLI                       1.59e-14  2_[1(5.39e-07)]_130_[2(1.42e-14)]_\
    85
HDE_CANTR                        3.01e-19  8_[1(5.69e-12)]_133_[2(2.30e-10)]_\
    139_[1(1.62e-13)]_123_[2(4.98e-14)]_419
HDHA_ECOLI                       4.82e-21  11_[1(3.05e-15)]_126_[2(5.54e-13)]_\
    76
LIGD_PSEPA                       3.76e-12  6_[1(2.26e-11)]_129_[2(6.67e-08)]_\
    128
NODG_RHIME                       3.29e-22  6_[1(6.32e-13)]_124_[2(1.89e-16)]_\
    73
RIDH_KLEAE                       2.85e-21  14_[1(6.37e-15)]_124_[2(1.63e-13)]_\
    69
YINL_LISMO                       1.95e-24  5_[1(9.09e-18)]_127_[2(6.93e-14)]_\
    74
YRTP_BACSU                       5.46e-27  6_[1(5.84e-17)]_127_[2(3.00e-17)]_\
    63
CSGA_MYXXA                       3.74e-09  87_[2(1.46e-12)]_58
DHB2_HUMAN                       9.93e-21  82_[1(4.55e-14)]_128_[2(3.18e-14)]_\
    135
DHB3_HUMAN                       5.62e-20  48_[1(2.72e-13)]_128_[2(4.98e-14)]_\
    92
DHCA_HUMAN                       1.20e-15  4_[1(5.63e-16)]_167_[2(8.31e-07)]_\
    63
FABI_ECOLI                       1.15e-03  6_[1(9.98e-06)]_235
FVT1_HUMAN                       6.79e-23  32_[1(6.59e-14)]_132_[2(1.89e-16)]_\
    126
HMTR_LEIMA                       5.92e-21  6_[1(3.83e-13)]_165_[2(4.21e-15)]_\
    74
MAS1_AGRRA                       1.37e-11  245_[1(5.82e-13)]_125_[2(3.87e-06)]_\
    64
PCR_PEA                          4.32e-11  86_[1(2.12e-14)]_292
RFBB_NEIGO                       2.77e-18  6_[1(2.11e-12)]_137_[2(2.74e-13)]_\
    161
YURA_MYXXA                       1.06e-10  159_[2(2.01e-14)]_78
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-iMac.local

********************************************************************************
