********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.3 (Release date: Sat Jun 10 16:19:38 2023 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= nrmix.nseqs.100.100bp.seed.1.fa
CONTROL SEQUENCES= --none--
ALPHABET= ACGT

********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -oc xstreme_example_output_files/meme_out -mod zoops -minw 6 -maxw 15 -bfile xstreme_example_output_files/background -markov_order 2 -seed 0 -dna -revcomp -evt 0.05 -p 4 -nostatus nrmix.nseqs.100.100bp.seed.1.fa 

model:  mod=         zoops    nmotifs=      1000    evt=          0.05
objective function:           em=       E-value of product of p-values
                              starts=   E-value of product of p-values
strands: + -
width:  minw=            6    maxw=           15
nsites: minsites=        2    maxsites=     2100    wnsites=       0.8
theta:  spmap=         uni    spfuzz=        0.5
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
trim:   wg=             11    ws=              1    endgaps=       yes
data:   n=          210000    N=            2100
sample: seed=            0    hsfrac=          0
        searchsize= 100000    norand=         no    csites=       1000
Letter frequencies in dataset:
A 0.222 C 0.278 G 0.278 T 0.222 
Background letter frequencies (from file xstreme_example_output_files/background):
A 0.222 C 0.278 G 0.278 T 0.222 
Background model order: 2
********************************************************************************


********************************************************************************
MOTIF TTTTYTTTTYTTTYW MEME-1	width =  15  sites = 154  llr = 1662  E-value = 2.7e-059
********************************************************************************
--------------------------------------------------------------------------------
	Motif TTTTYTTTTYTTTYW MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :1311::211::::3
pos.-specific     C  2::13:1233:::42
probability       G  :1:21:1111:3:2:
matrix            T  87764a9564a7a45

         bits    2.2           *    
                 2.0      *    * *  
                 1.7      *    * *  
                 1.5 *    **   * *  
Relative         1.3 * *  **   * *  
Entropy          1.1 ***  **   ***  
(15.6 bits)      0.9 ***  **   ***  
                 0.7 **** ** * *** *
                 0.4 **** **** *****
                 0.2 ***************
                 0.0 ---------------

Multilevel           TTTTTTTTTTTTTCT
consensus              A C  ACC G TA
sequence                            
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TTTTYTTTTYTTTYW MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 11.6444 E= 2.7e-059 
  -509    -78  -1391    191 
   -92  -1391   -103    175 
    23   -542  -1391    173 
  -119   -142    -67    149 
  -164     28    -90     99 
  -277  -1391  -1391    212 
 -1391   -210   -225    198 
    -5    -78   -133    121 
  -209     -6   -210    148 
   -85     31   -151     97 
 -1391  -1391  -1391    217 
 -1391   -310      7    161 
 -1391  -1391   -383    214 
  -509     62    -61     79 
    63    -67  -1391    111 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TTTTYTTTTYTTTYW MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 154 E= 2.7e-059 
 0.006494  0.162338  0.000000  0.831169 
 0.116883  0.000000  0.136364  0.746753 
 0.259740  0.006494  0.000000  0.733766 
 0.097403  0.103896  0.175325  0.623377 
 0.071429  0.337662  0.149351  0.441558 
 0.032468  0.000000  0.000000  0.967532 
 0.000000  0.064935  0.058442  0.876623 
 0.214286  0.162338  0.110390  0.512987 
 0.051948  0.266234  0.064935  0.616883 
 0.123377  0.344156  0.097403  0.435065 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.032468  0.292208  0.675325 
 0.000000  0.000000  0.019481  0.980519 
 0.006494  0.428571  0.181818  0.383117 
 0.344156  0.175325  0.000000  0.480519 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TTTTYTTTTYTTTYW MEME-1 regular expression
--------------------------------------------------------------------------------
TT[TA]T[TC]TT[TA][TC][TC]T[TG]T[CT][TA]
--------------------------------------------------------------------------------




Time 142.24 secs.

********************************************************************************


********************************************************************************
MOTIF VATGACTCAG MEME-2	width =  10  sites = 210  llr = 2135  E-value = 3.5e-062
********************************************************************************
--------------------------------------------------------------------------------
	Motif VATGACTCAG MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  26::a:::a:
pos.-specific     C  21:::8:a:1
probability       G  43:a:2:::7
matrix            T  2:a:::a::2

         bits    2.2   * * * * 
                 2.0   * * * * 
                 1.7   *** *** 
                 1.5   *** *** 
Relative         1.3   *** *** 
Entropy          1.1   *** *** 
(14.7 bits)      0.9  ******** 
                 0.7  *********
                 0.4  *********
                 0.2  *********
                 0.0 ----------

Multilevel           GATGACTCAG
consensus            CG   G    
sequence             A         
                               
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VATGACTCAG MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 10 n= 191100 bayes= 12.0454 E= 3.5e-062 
    -2    -17     38    -37 
   152   -217     11  -1436 
 -1436  -1436  -1436    217 
 -1436  -1436    183   -396 
   217  -1436  -1436  -1436 
  -554    146    -48   -296 
 -1436  -1436  -1436    217 
  -354    182  -1436  -1436 
   217  -1436  -1436  -1436 
  -322   -170    138    -41 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VATGACTCAG MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 10 nsites= 210 E= 3.5e-062 
 0.219048  0.247619  0.361905  0.171429 
 0.638095  0.061905  0.300000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.985714  0.014286 
 1.000000  0.000000  0.000000  0.000000 
 0.004762  0.766667  0.200000  0.028571 
 0.000000  0.000000  0.000000  1.000000 
 0.019048  0.980952  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.023810  0.085714  0.723810  0.166667 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif VATGACTCAG MEME-2 regular expression
--------------------------------------------------------------------------------
[GCA][AG]TGA[CG]TCAG
--------------------------------------------------------------------------------




Time 260.54 secs.

********************************************************************************


********************************************************************************
MOTIF SCCCCGCCCCC MEME-3	width =  11  sites = 324  llr = 2905  E-value = 1.3e-045
********************************************************************************
--------------------------------------------------------------------------------
	Motif SCCCCGCCCCC MEME-3 Description
--------------------------------------------------------------------------------
Simplified        A  11:1:2:::::
pos.-specific     C  3789a:aa898
probability       G  5:1::6::::1
matrix            T  121::2::211

         bits    2.2            
                 2.0     *  *   
                 1.7     *  *   
                 1.5    ** **   
Relative         1.3    ** ** * 
Entropy          1.1   *** **** 
(12.9 bits)      0.9  **** *****
                 0.7  **********
                 0.4  **********
                 0.2 ***********
                 0.0 -----------

Multilevel           GCCCCGCCCCC
consensus            CT      T  
sequence                        
                                
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SCCCCGCCCCC MEME-3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 11 n= 189000 bayes= 11.2494 E= 1.3e-045 
  -178      3     86    -61 
  -208    140  -1498     -6 
 -1498    152   -217    -68 
  -192    175  -1498   -616 
 -1498    185  -1498  -1498 
   -33  -1498    121    -29 
 -1498    179   -291  -1498 
 -1498    185  -1498  -1498 
 -1498    144  -1498     15 
  -271    169  -1498   -171 
 -1498    146   -154    -68 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SCCCCGCCCCC MEME-3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 11 nsites= 324 E= 1.3e-045 
 0.064815  0.283951  0.506173  0.145062 
 0.052469  0.734568  0.000000  0.212963 
 0.000000  0.799383  0.061728  0.138889 
 0.058642  0.938272  0.000000  0.003086 
 0.000000  1.000000  0.000000  0.000000 
 0.175926  0.000000  0.641975  0.182099 
 0.000000  0.962963  0.037037  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.753086  0.000000  0.246914 
 0.033951  0.898148  0.000000  0.067901 
 0.000000  0.765432  0.095679  0.138889 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif SCCCCGCCCCC MEME-3 regular expression
--------------------------------------------------------------------------------
[GC][CT]CCCGCC[CT]CC
--------------------------------------------------------------------------------




Time 385.59 secs.

********************************************************************************


********************************************************************************
MOTIF CCASYAGRKGGCRSY MEME-4	width =  15  sites = 214  llr = 2219  E-value = 4.6e-056
********************************************************************************
--------------------------------------------------------------------------------
	Motif CCASYAGRKGGCRSY MEME-4 Description
--------------------------------------------------------------------------------
Simplified        A  1:7:18:4:::2311
pos.-specific     C  9a:64::::::7154
probability       G  ::2411a66a9:631
matrix            T  1:2:41::3::1:14

         bits    2.2                
                 2.0       *  *     
                 1.7  *    *  *     
                 1.5  *    *  **    
Relative         1.3 **   **  **    
Entropy          1.1 **   **  **    
(15.0 bits)      0.9 **** *******   
                 0.7 **** ********  
                 0.4 **** ********  
                 0.2 ***************
                 0.0 ---------------

Multilevel           CCACCAGGGGGCGCT
consensus               GT  AT   AGC
sequence                            
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCASYAGRKGGCRSY MEME-4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 11.366 E= 4.6e-056 
  -187    167  -1439   -211 
 -1439    184  -1439   -557 
   159   -489    -73    -53 
 -1439    113     50  -1439 
   -66     46   -125     70 
   187  -1439   -181   -105 
 -1439  -1439    185  -1439 
    66  -1439    120   -457 
  -225  -1439    118     54 
 -1439  -1439    185  -1439 
  -276  -1439    173   -240 
   -25    137  -1439   -125 
    60   -244    102   -225 
  -118     93     13   -166 
   -62     39   -125     75 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCASYAGRKGGCRSY MEME-4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 214 E= 4.6e-056 
 0.060748  0.887850  0.000000  0.051402 
 0.000000  0.995327  0.000000  0.004673 
 0.668224  0.009346  0.168224  0.154206 
 0.000000  0.607477  0.392523  0.000000 
 0.140187  0.383178  0.116822  0.359813 
 0.813084  0.000000  0.079439  0.107477 
 0.000000  0.000000  1.000000  0.000000 
 0.350467  0.000000  0.640187  0.009346 
 0.046729  0.000000  0.630841  0.322430 
 0.000000  0.000000  1.000000  0.000000 
 0.032710  0.000000  0.925234  0.042056 
 0.186916  0.719626  0.000000  0.093458 
 0.336449  0.051402  0.565421  0.046729 
 0.098131  0.528037  0.303738  0.070093 
 0.144860  0.364486  0.116822  0.373832 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CCASYAGRKGGCRSY MEME-4 regular expression
--------------------------------------------------------------------------------
CCA[CG][CT]AG[GA][GT]GGC[GA][CG][TC]
--------------------------------------------------------------------------------




Time 499.39 secs.

********************************************************************************


********************************************************************************
MOTIF CTTATCT MEME-5	width =   7  sites = 107  llr = 1069  E-value = 1.1e-014
********************************************************************************
--------------------------------------------------------------------------------
	Motif CTTATCT MEME-5 Description
--------------------------------------------------------------------------------
Simplified        A  :::a:::
pos.-specific     C  a::::a:
probability       G  :::::::
matrix            T  :aa:a:a

         bits    2.2  **** *
                 2.0  ******
                 1.7 *******
                 1.5 *******
Relative         1.3 *******
Entropy          1.1 *******
(14.4 bits)      0.9 *******
                 0.7 *******
                 0.4 *******
                 0.2 *******
                 0.0 -------

Multilevel           CTTATCT
consensus                   
sequence                    
                            
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTATCT MEME-5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 7 n= 197400 bayes= 12.4946 E= 1.1e-014 
 -1339    182   -389  -1339 
 -1339  -1339  -1339    217 
 -1339  -1339  -1339    217 
   217  -1339  -1339  -1339 
 -1339  -1339  -1339    217 
 -1339    185  -1339  -1339 
 -1339  -1339  -1339    217 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTATCT MEME-5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 7 nsites= 107 E= 1.1e-014 
 0.000000  0.981308  0.018692  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTATCT MEME-5 regular expression
--------------------------------------------------------------------------------
CTTATCT
--------------------------------------------------------------------------------




Time 612.84 secs.

********************************************************************************


********************************************************************************
MOTIF GACTACAWYTCCCAG MEME-6	width =  15  sites =  23  llr = 363  E-value = 8.9e-014
********************************************************************************
--------------------------------------------------------------------------------
	Motif GACTACAWYTCCCAG MEME-6 Description
--------------------------------------------------------------------------------
Simplified        A  29::a:84:::::8:
pos.-specific     C  :1a2:a::5:aaa:1
probability       G  7:::::2:1::::27
matrix            T  :::8:::54a::::2

         bits    2.2     *    *     
                 2.0     **   ****  
                 1.7  *  **   ****  
                 1.5  ******  ***** 
Relative         1.3  ******  ***** 
Entropy          1.1  ******  ***** 
(22.7 bits)      0.9 ******** ******
                 0.7 ***************
                 0.4 ***************
                 0.2 ***************
                 0.0 ---------------

Multilevel           GACTACATCTCCCAG
consensus            A      AT      
sequence                            
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GACTACAWYTCCCAG MEME-6 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 14.4989 E= 8.9e-014 
    -3   -267    141  -1117 
   204   -168  -1117  -1117 
  -235    178  -1117  -1117 
 -1117    -68  -1117    190 
   217  -1117  -1117  -1117 
 -1117    185  -1117  -1117 
   190  -1117    -68  -1117 
    97   -267  -1117    123 
 -1117     78   -168     97 
 -1117  -1117  -1117    217 
 -1117    185  -1117  -1117 
 -1117    185  -1117  -1117 
 -1117    185  -1117  -1117 
   190  -1117    -68  -1117 
 -1117   -168    141    -35 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GACTACAWYTCCCAG MEME-6 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 23 E= 8.9e-014 
 0.217391  0.043478  0.739130  0.000000 
 0.913043  0.086957  0.000000  0.000000 
 0.043478  0.956522  0.000000  0.000000 
 0.000000  0.173913  0.000000  0.826087 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.826087  0.000000  0.173913  0.000000 
 0.434783  0.043478  0.000000  0.521739 
 0.000000  0.478261  0.086957  0.434783 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.826087  0.000000  0.173913  0.000000 
 0.000000  0.086957  0.739130  0.173913 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GACTACAWYTCCCAG MEME-6 regular expression
--------------------------------------------------------------------------------
[GA]ACTACA[TA][CT]TCCCAG
--------------------------------------------------------------------------------




Time 725.74 secs.

********************************************************************************


********************************************************************************
MOTIF TGCACTCCAGCCTGG MEME-7	width =  15  sites =  15  llr = 273  E-value = 2.1e-005
********************************************************************************
--------------------------------------------------------------------------------
	Motif TGCACTCCAGCCTGG MEME-7 Description
--------------------------------------------------------------------------------
Simplified        A  :::9:1::9::::::
pos.-specific     C  ::a:a:a91:9a:::
probability       G  1a:1:::1:a1::aa
matrix            T  9::1:9::::1:a::

         bits    2.2             *  
                 2.0  ** * *  * ****
                 1.7 *** * * ** ****
                 1.5 ********** ****
Relative         1.3 ********** ****
Entropy          1.1 ***************
(26.3 bits)      0.9 ***************
                 0.7 ***************
                 0.4 ***************
                 0.2 ***************
                 0.0 ---------------

Multilevel           TGCACTCCAGCCTGG
consensus                           
sequence                            
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TGCACTCCAGCCTGG MEME-7 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 14.2297 E= 2.1e-005 
 -1055  -1055   -206    207 
 -1055  -1055    185  -1055 
 -1055    185  -1055  -1055 
   196  -1055   -206   -173 
 -1055    185  -1055  -1055 
   -73  -1055  -1055    196 
 -1055    185  -1055  -1055 
 -1055    175   -206  -1055 
   207   -206  -1055  -1055 
 -1055  -1055    185  -1055 
 -1055    164   -206   -173 
 -1055    185  -1055  -1055 
 -1055  -1055  -1055    217 
 -1055  -1055    185  -1055 
 -1055  -1055    185  -1055 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TGCACTCCAGCCTGG MEME-7 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 15 E= 2.1e-005 
 0.000000  0.000000  0.066667  0.933333 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.866667  0.000000  0.066667  0.066667 
 0.000000  1.000000  0.000000  0.000000 
 0.133333  0.000000  0.000000  0.866667 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.933333  0.066667  0.000000 
 0.933333  0.066667  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.866667  0.066667  0.066667 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TGCACTCCAGCCTGG MEME-7 regular expression
--------------------------------------------------------------------------------
TGCACTCCAGCCTGG
--------------------------------------------------------------------------------




Time 835.04 secs.

********************************************************************************


********************************************************************************
MOTIF AAASAGGAAGT MEME-8	width =  11  sites =  75  llr = 777  E-value = 2.9e-004
********************************************************************************
--------------------------------------------------------------------------------
	Motif AAASAGGAAGT MEME-8 Description
--------------------------------------------------------------------------------
Simplified        A  776:9::a9::
pos.-specific     C  1116::1:::1
probability       G  2113:a9::a:
matrix            T  :121::::1:9

         bits    2.2        *   
                 2.0      * *  *
                 1.7      * ****
                 1.5     ** ****
Relative         1.3     *******
Entropy          1.1     *******
(14.9 bits)      0.9 *   *******
                 0.7 ***********
                 0.4 ***********
                 0.2 ***********
                 0.0 -----------

Multilevel           AAACAGGAAGT
consensus              TG       
sequence                        
                                
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AAASAGGAAGT MEME-8 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 11 n= 189000 bayes= 12.7308 E= 2.9e-004 
   164   -138    -58   -405 
   162    -92   -180   -125 
   140   -138   -206     11 
 -1287    111     26   -173 
   203   -280   -438   -247 
 -1287  -1287    185  -1287 
 -1287    -92    162  -1287 
   217  -1287  -1287  -1287 
   205  -1287  -1287   -147 
 -1287   -438    183  -1287 
 -1287   -238  -1287    209 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AAASAGGAAGT MEME-8 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 11 nsites= 75 E= 2.9e-004 
 0.693333  0.106667  0.186667  0.013333 
 0.680000  0.146667  0.080000  0.093333 
 0.586667  0.106667  0.066667  0.240000 
 0.000000  0.600000  0.333333  0.066667 
 0.906667  0.040000  0.013333  0.040000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.146667  0.853333  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.920000  0.000000  0.000000  0.080000 
 0.000000  0.013333  0.986667  0.000000 
 0.000000  0.053333  0.000000  0.946667 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AAASAGGAAGT MEME-8 regular expression
--------------------------------------------------------------------------------
AA[AT][CG]AGGAAGT
--------------------------------------------------------------------------------




Time 944.09 secs.

********************************************************************************


********************************************************************************
MOTIF GCGCMTGCGCG MEME-9	width =  11  sites = 103  llr = 1093  E-value = 3.1e-003
********************************************************************************
--------------------------------------------------------------------------------
	Motif GCGCMTGCGCG MEME-9 Description
--------------------------------------------------------------------------------
Simplified        A  2:::4:::::3
pos.-specific     C  :a:9531a:a:
probability       G  8:a11:9:a:7
matrix            T  :::::7:::::

         bits    2.2            
                 2.0  **    *   
                 1.7  **    *** 
                 1.5  **    *** 
Relative         1.3  *** ***** 
Entropy          1.1 **** ***** 
(15.3 bits)      0.9 **** ******
                 0.7 ***********
                 0.4 ***********
                 0.2 ***********
                 0.0 -----------

Multilevel           GCGCCTGCGCG
consensus            A   AC    A
sequence                        
                                
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCGCMTGCGCG MEME-9 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 11 n= 189000 bayes= 11.9979 E= 3.1e-003 
    -6  -1333    145   -293 
 -1333    185  -1333  -1333 
 -1333  -1333    185  -1333 
 -1333    164   -103  -1333 
    84     97   -225  -1333 
 -1333    -14  -1333    175 
 -1333   -114    165  -1333 
 -1333    185  -1333  -1333 
 -1333   -384    180   -451 
  -293    180  -1333  -1333 
    39   -325    129  -1333 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCGCMTGCGCG MEME-9 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 11 nsites= 103 E= 3.1e-003 
 0.213592  0.000000  0.757282  0.029126 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.864078  0.135922  0.000000 
 0.398058  0.543689  0.058252  0.000000 
 0.000000  0.252427  0.000000  0.747573 
 0.000000  0.126214  0.873786  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.019417  0.970874  0.009709 
 0.029126  0.970874  0.000000  0.000000 
 0.291262  0.029126  0.679612  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GCGCMTGCGCG MEME-9 regular expression
--------------------------------------------------------------------------------
[GA]CGC[CA][TC]GCGC[GA]
--------------------------------------------------------------------------------




Time 1054.19 secs.

********************************************************************************


********************************************************************************
MOTIF RGCTCACTGCAGCCT MEME-10	width =  15  sites =  20  llr = 302  E-value = 2.8e-002
********************************************************************************
--------------------------------------------------------------------------------
	Motif RGCTCACTGCAGCCT MEME-10 Description
--------------------------------------------------------------------------------
Simplified        A  7:::2a121:a221:
pos.-specific     C  ::8:8:731a::79:
probability       G  4a2:::::9::91::
matrix            T  :::a::36::::1:a

         bits    2.2    * *    *   *
                 2.0  * * *   **   *
                 1.7  * * *   **   *
                 1.5  * * *   **   *
Relative         1.3  * * *  **** **
Entropy          1.1 ******  **** **
(21.8 bits)      0.9 ******* **** **
                 0.7 ************ **
                 0.4 ***************
                 0.2 ***************
                 0.0 ---------------

Multilevel           AGCTCACTGCAGCCT
consensus            G G A TC       
sequence                    A       
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RGCTCACTGCAGCCT MEME-10 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 180600 bayes= 13.3919 E= 2.8e-002 
   155  -1097     33  -1097 
 -1097  -1097    185  -1097 
 -1097    152    -48  -1097 
 -1097  -1097  -1097    217 
   -15    152  -1097  -1097 
   217  -1097  -1097  -1097 
  -215    133  -1097     17 
   -15    -15  -1097    131 
  -215   -247    169  -1097 
 -1097    185  -1097  -1097 
   217  -1097  -1097  -1097 
   -56  -1097    161  -1097 
   -56    122   -147   -115 
  -115    169  -1097  -1097 
 -1097  -1097  -1097    217 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RGCTCACTGCAGCCT MEME-10 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 20 E= 2.8e-002 
 0.650000  0.000000  0.350000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.800000  0.200000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.200000  0.800000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.050000  0.700000  0.000000  0.250000 
 0.200000  0.250000  0.000000  0.550000 
 0.050000  0.050000  0.900000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.150000  0.000000  0.850000  0.000000 
 0.150000  0.650000  0.100000  0.100000 
 0.100000  0.900000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RGCTCACTGCAGCCT MEME-10 regular expression
--------------------------------------------------------------------------------
[AG]G[CG]T[CA]A[CT][TCA]GCAGCCT
--------------------------------------------------------------------------------




Time 1156.94 secs.

********************************************************************************

********************************************************************************
Stopped because the next motif E-value > 5.00e-02.
********************************************************************************

CPU: Timothys-iMac.local

********************************************************************************
