********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/farntrans5.s
CONTROL SEQUENCES= --none--
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
RAM1_YEAST               1.0000    431  PFTB_RAT                 1.0000    437  
BET2_YEAST               1.0000    325  RATRABGERB               1.0000    331  
CAL1_YEAST               1.0000    376  
********************************************************************************

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COMMAND LINE SUMMARY
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This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme common/farntrans5.s -oc results/meme15 -mod anr -protein -nmotifs 2 -objfun classic -minw 8 -nostatus -mpi 

model:  mod=           anr    nmotifs=         2    evt=           inf
objective function:           em=       E-value of product of p-values
                              starts=   E-value of product of p-values
width:  minw=            8    maxw=           50
nsites: minsites=        2    maxsites=       25    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=            9500    maxiter=        50
        distance=    1e-05
trim:   wg=             11    ws=              1    endgaps=       yes
data:   n=            1900    N=               5
sample: seed=            0    hsfrac=          0
        searchsize=   1900    norand=         no    csites=       1000
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.0611 C 0.0368 D 0.0616 E 0.0605 F 0.0437 G 0.0753 H 0.03 I 0.0526 K 0.0505 
L 0.114 M 0.0205 N 0.0337 P 0.0411 Q 0.0384 R 0.0405 S 0.0779 T 0.0458 V 0.0574 
W 0.0179 Y 0.0411 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.0609 C 0.037 D 0.0615 E 0.0604 F 0.0437 G 0.075 H 0.0302 I 0.0526 K 0.0505 
L 0.113 M 0.0208 N 0.0339 P 0.0411 Q 0.0385 R 0.0406 S 0.0776 T 0.0458 V 0.0573 
W 0.0182 Y 0.0411 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1	width =  30  sites =  24  llr = 854  E-value = 2.2e-094
********************************************************************************
--------------------------------------------------------------------------------
	Motif GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :::2::::1:2:11:1:1413314:1:1::
pos.-specific     C  ::::1::::::::2::132::::1::::::
probability       D  ::::21::11:6::::::::::::::2:13
matrix            E  ::::::1114::::::::::::::::1111
                  F  :16:::::::::111:31::::::::::1:
                  G  861241:42:::221:::2:22::::3::1
                  H  ::::::::11:4::2::::::::::::::1
                  I  ::1:::1::::::::1:::1:1::42:11:
                  K  :::::1::3::::::::::::::::::2::
                  L  ::21:::::2::31::1::5::9:55::4:
                  M  ::::::::::::::::::::::::::::::
                  N  :1:1:::21:::::::::::1:::::1:::
                  P  ::::::5:::2:::::::::::::::::::
                  Q  :::1::::1:::::1:::::1:::::::::
                  R  :::::3:::::::2:::::::::::::1::
                  S  :1:2::::::2:::13:1::32:3::12::
                  T  ::::::::::::2::5:1:1:1:1:1:::1
                  V  :::::::1::3:2:::::12::::1:::::
                  W  ::::::::::::::::13::::::::::::
                  Y  :::::::::::::14:31:::::::1::::

         bits    5.8                               
                 5.2                               
                 4.6                               
                 4.0                               
Relative         3.5            *                  
Entropy          2.9 *          *          *       
(51.4 bits)      2.3 ***        *   * **   * *     
                 1.7 ***   ** ***  ***** * ****    
                 1.2 ******************************
                 0.6 ******************************
                 0.0 ------------------------------

Multilevel           GGFGGRPGKEVDLCYTFCALAALALLGSLD
consensus                     LAH  HSYWCVSS SI     
sequence                       P       G           
                                                   
                                                   
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                         Site           
-------------             ----- ---------            ------------------------------
BET2_YEAST                  223  6.98e-22 WWLCERQLPE GGLNGRPSKLPDVCYSWWVLSSLAIIGRLD WINYEKLTEF
RATRABGERB                  227  4.67e-21 WWLCERQLPS GGLNGRPEKLPDVCYSWWVLASLKIIGRLH WIDREKLRSF
CAL1_YEAST                  275  1.25e-19 LNASYDQSDD GGFQGRENKFADTCYAFWCLNSLHLLTKDW KMLCQTELVT
PFTB_RAT                    237  1.56e-19 EWIARCQNWE GGIGGVPGMEAHGGYTFCGLAALVILKKER SLNLKSLLQW
PFTB_RAT                    138  2.44e-19 QFLELCQSPD GGFGGGPGQYPHLAPTYAAVNALCIIGTEE AYNVINREKL
RATRABGERB                  179  6.47e-19 EFVLSCMNFD GGFGCRPGSESHAGQIYCCTGFLAITSQLH QVNSDLLGWW
RATRABGERB                  131  8.90e-19 AYVQSLQKED GSFAGDIWGEIDTRFSFCAVATLALLGKLD AINVEKAIEF
BET2_YEAST                  172  2.53e-18 DFVLKCYNFD GGFGLCPNAESHAAQAFTCLGALAIANKLD MLSDDQLEEI
RATRABGERB                  276  1.27e-17 FILACQDEET GGFADRPGDMVDPFHTLFGIAGLSLLGEEQ IKPVSPVFCM
BET2_YEAST                  124  2.77e-17 SFIRGNQLED GSFQGDRFGEVDTRFVYTALSALSILGELT SEVVDPAVDF
RAM1_YEAST                  247  4.93e-17 YLKNCQNYEG GFGSCPHVDEAHGGYTFCATASLAILRSMD QINVEKLLEW
BET2_YEAST                  272  7.19e-17 FILKCQDEKK GGISDRPENEVDVFHTVFGVAGLSLMGYDN LVPIDPIYCM
RAM1_YEAST                  145  8.68e-17 VKLFTISPSG GPFGGGPGQLSHLASTYAAINALSLCDNID GCWDRIDRKG
PFTB_RAT                    286  2.62e-16 WVTSRQMRFE GGFQGRCNKLVDGCYSFWQAGLLPLLHRAL HAQGDPALSM
RAM1_YEAST                  296  2.87e-16 WSSARQLQEE RGFCGRSNKLVDGCYSFWVGGSAAILEAFG YGQCFNKHAL
PFTB_RAT                    348  7.66e-15 YILMCCQCPA GGLLDKPGKSRDFYHTCYCLSGLSIAQHFG SGAMLHDVVM
RATRABGERB                   83  2.21e-14 VFIKSCQHEC GGVSASIGHDPHLLYTLSAVQILTLYDSIH VINVDKVVAY
PFTB_RAT                    189  3.29e-14 QYLYSLKQPD GSFLMHVGGEVDVRSAYCAASVASLTNIIT PDLFEGTAEW
BET2_YEAST                   73  7.21e-14 FVLSCWDDKY GAFAPFPRHDAHLLTTLSAVQILATYDALD VLGKDRKVRL
CAL1_YEAST                  205  1.14e-13 LLGYIMSQQC YNGAFGAHNEPHSGYTSCALSTLALLSSLE KLSDKFKEDT
RAM1_YEAST                  198  1.67e-13 WLISLKEPNG GFKTCLEVGEVDTRGIYCALSIATLLNILT EELTEGVLNY
CAL1_YEAST                  327  4.42e-13 LLDRTQKTLT GGFSKNDEEDADLYHSCLGSAALALIEGKF NGELCIPQEI
RAM1_YEAST                  349  5.11e-13 ILYCCQEKEQ PGLRDKPGAHSDFYHTNYCLLGLAVAESSY SCTPNDSPHN
BET2_YEAST                   24  2.82e-10 RYIESLDTNK HNFEYWLTEHLRLNGIYWGLTALCVLDSPE TFVKEEVISF
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
BET2_YEAST                        2.8e-10  23_[1]_19_[1]_21_[1]_18_[1]_21_
                                           [1]_19_[1]_24
RATRABGERB                        2.2e-14  82_[1]_18_[1]_18_[1]_18_[1]_19_[1]_26
CAL1_YEAST                        1.1e-13  204_[1]_40_[1]_22_[1]_20
PFTB_RAT                          3.3e-14  137_[1]_21_[1]_18_[1]_19_[1]_32_
                                           [1]_60
RAM1_YEAST                        1.7e-13  144_[1]_23_[1]_19_[1]_19_[1]_23_
                                           [1]_53
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF GGFGGRPGKEVDLCYTYCALAALAJLGSLD width=30 seqs=24
BET2_YEAST               (  223) GGLNGRPSKLPDVCYSWWVLSSLAIIGRLD  1 
RATRABGERB               (  227) GGLNGRPEKLPDVCYSWWVLASLKIIGRLH  1 
CAL1_YEAST               (  275) GGFQGRENKFADTCYAFWCLNSLHLLTKDW  1 
PFTB_RAT                 (  237) GGIGGVPGMEAHGGYTFCGLAALVILKKER  1 
PFTB_RAT                 (  138) GGFGGGPGQYPHLAPTYAAVNALCIIGTEE  1 
RATRABGERB               (  179) GGFGCRPGSESHAGQIYCCTGFLAITSQLH  1 
RATRABGERB               (  131) GSFAGDIWGEIDTRFSFCAVATLALLGKLD  1 
BET2_YEAST               (  172) GGFGLCPNAESHAAQAFTCLGALAIANKLD  1 
RATRABGERB               (  276) GGFADRPGDMVDPFHTLFGIAGLSLLGEEQ  1 
BET2_YEAST               (  124) GSFQGDRFGEVDTRFVYTALSALSILGELT  1 
RAM1_YEAST               (  247) GFGSCPHVDEAHGGYTFCATASLAILRSMD  1 
BET2_YEAST               (  272) GGISDRPENEVDVFHTVFGVAGLSLMGYDN  1 
RAM1_YEAST               (  145) GPFGGGPGQLSHLASTYAAINALSLCDNID  1 
PFTB_RAT                 (  286) GGFQGRCNKLVDGCYSFWQAGLLPLLHRAL  1 
RAM1_YEAST               (  296) RGFCGRSNKLVDGCYSFWVGGSAAILEAFG  1 
PFTB_RAT                 (  348) GGLLDKPGKSRDFYHTCYCLSGLSIAQHFG  1 
RATRABGERB               (   83) GGVSASIGHDPHLLYTLSAVQILTLYDSIH  1 
PFTB_RAT                 (  189) GSFLMHVGGEVDVRSAYCAASVASLTNIIT  1 
BET2_YEAST               (   73) GAFAPFPRHDAHLLTTLSAVQILATYDALD  1 
CAL1_YEAST               (  205) YNGAFGAHNEPHSGYTSCALSTLALLSSLE  1 
RAM1_YEAST               (  198) GFKTCLEVGEVDTRGIYCALSIATLLNILT  1 
CAL1_YEAST               (  327) GGFSKNDEEDADLYHSCLGSAALALIEGKF  1 
RAM1_YEAST               (  349) PGLRDKPGAHSDFYHTNYCLLGLAVAESSY  1 
BET2_YEAST               (   24) HNFEYWLTEHLRLNGIYWGLTALCVLDSPE  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 30 n= 1755 bayes= 6.12445 E= 2.2e-094 
  -218   -476   -324   -369   -492    351    -61   -474   -334   -558   -392   -225   -103   -392    -86   -303   -361   -418   -449   -109 
   -81   -469   -328   -377     -1    329   -398   -485   -348   -567   -404     54    -81   -396   -330     -9   -350   -421   -467   -482 
  -258   -349   -504   -436    380    -47   -393     39    -82     20   -134   -364   -401   -385   -376   -350   -259    -35   -300   -200 
   127    -17   -201     -5   -348    114   -187   -312    -81    -63   -205    120   -263    155     27     92      7   -262   -388   -304 
   -26    143    115   -207    -17    219   -252   -171     -9   -112     95   -185    -16   -179   -194   -235   -164   -152   -351    -13 
  -146    -17     33   -115    -32     45     38   -310     85   -143   -204     47    -13    -95    271    -53   -143    -50     83   -303 
   -47    -38    -90      6   -396   -375      0     15   -233   -169   -289   -260    375   -236    -26    -97   -232    -75   -474   -425 
  -148   -438   -204     99    -31    196     38   -302    -85   -336   -202    205   -266    -99     26    -54      6     33     83   -304 
    47   -444     34     57   -349     84    122   -315    209   -342     79    121   -263    109   -118    -53   -144   -265   -389   -305 
  -160   -417     82    250    -25   -316    123   -255   -111     61     85   -136   -283   -122   -146    -60   -157   -222   -376    -14 
   161   -320   -465   -373   -228   -392   -333     13   -325    -90   -101   -301    208   -309     -7     90   -181    221   -331   -288 
  -441   -652    318   -353   -595   -399    355   -674   -343   -688   -599   -160   -497   -375      4   -359   -388   -625   -638   -515 
    47   -316   -480   -387     82     91   -336   -111   -338    103    -98   -307    -15   -317   -312    -83    170    152   -328   -285 
    94    221   -399   -311     80     90   -301   -130   -267    -30   -111     21   -354   -263    179   -282   -179   -116   -328    140 
  -167   -305   -308   -259    149    -77    196   -221   -241   -249   -153   -216    -75     19   -217    -54    -68   -205   -133    341 
    70   -383   -459   -463   -428   -445   -427     85   -369   -442   -260   -233   -417   -350   -355    143    348    -55   -479   -484 
  -171     21   -317   -268    232   -354    -39   -217   -251    -54   -152    -36   -288   -261   -224   -116   -223    -78    132    327 
    46    272   -490   -397     84   -403   -334   -119   -348    -90   -105   -315   -379   -326   -320      0     82   -107    351     88 
   277    240   -625   -594   -564    141   -583   -515   -585   -580   -446   -452   -451      4   -521   -277   -297    107   -614   -619 
    45   -317   -489   -395   -222    -96   -340     81   -346    184    -95   -313   -373   -323   -316    -85     81    179   -327   -285 
   211   -440   -248   -197   -413     97   -259   -375   -167   -146   -278    178   -326    106   -203    153      0   -315   -458   -377 
   213   -308   -476   -384     -5     88   -337    123   -337    -91    -99   -307   -372   -318   -311    118     79     12   -328   -287 
    87   -518   -675   -601   -319   -555   -562   -243   -565    290   -164   -543   -528   -491   -504   -490   -418   -296   -502   -500 
   317     38   -357   -284   -333   -228    -37   -275    -81   -332   -203   -259    -82   -270   -263     98     23    -47   -389   -382 
  -408   -489   -735   -670   -387   -688   -678    294   -638    194   -240   -597   -632   -619   -631   -623    -16     84   -602   -556 
    91      0   -492   -398   -220   -404   -343    158   -348    187    109   -317   -375   -324   -318   -313     78   -100   -329     80 
  -159   -454    121    100   -362    163     39   -329     20   -356   -221    172   -274     38     24     13      5   -279   -402   -316 
    47   -443   -200     57   -348    -88     38     37    160   -341   -205     47   -262     41    145    120      7   -264   -388    -19 
   -28   -364     22     86     69   -344   -250    108     -9    153     95   -185    -17   -174   -191    -72   -165   -153   -352   -294 
  -146   -443    171    100    -32     -6    175   -314    -80   -144   -205     47   -262     41     27   -178    126   -263     82    -19 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 30 nsites= 24 E= 2.2e-094 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.833333  0.041667  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.041667  0.000000  0.000000  0.000000  0.000000  0.041667 
 0.041667  0.000000  0.000000  0.000000  0.083333  0.625000  0.000000  0.000000  0.000000  0.000000  0.000000  0.083333  0.041667  0.000000  0.000000  0.125000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.583333  0.083333  0.000000  0.083333  0.041667  0.166667  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.000000 
 0.166667  0.041667  0.000000  0.041667  0.000000  0.208333  0.000000  0.000000  0.000000  0.083333  0.000000  0.083333  0.000000  0.125000  0.041667  0.166667  0.041667  0.000000  0.000000  0.000000 
 0.041667  0.125000  0.166667  0.000000  0.041667  0.416667  0.000000  0.000000  0.041667  0.041667  0.041667  0.000000  0.041667  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667 
 0.000000  0.041667  0.083333  0.000000  0.041667  0.125000  0.041667  0.000000  0.083333  0.041667  0.000000  0.041667  0.041667  0.000000  0.333333  0.041667  0.000000  0.041667  0.041667  0.000000 
 0.041667  0.041667  0.041667  0.083333  0.000000  0.000000  0.041667  0.083333  0.000000  0.041667  0.000000  0.000000  0.500000  0.000000  0.041667  0.041667  0.000000  0.041667  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.125000  0.041667  0.375000  0.041667  0.000000  0.000000  0.000000  0.000000  0.166667  0.000000  0.000000  0.041667  0.041667  0.041667  0.083333  0.041667  0.000000 
 0.083333  0.000000  0.083333  0.083333  0.000000  0.166667  0.083333  0.000000  0.250000  0.000000  0.041667  0.083333  0.000000  0.083333  0.000000  0.041667  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.125000  0.416667  0.041667  0.000000  0.083333  0.000000  0.000000  0.208333  0.041667  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.000000  0.000000  0.041667 
 0.208333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.041667  0.000000  0.000000  0.208333  0.000000  0.041667  0.166667  0.000000  0.291667  0.000000  0.000000 
 0.000000  0.000000  0.583333  0.000000  0.000000  0.000000  0.375000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.083333  0.000000  0.000000  0.000000  0.083333  0.166667  0.000000  0.000000  0.000000  0.250000  0.000000  0.000000  0.041667  0.000000  0.000000  0.041667  0.166667  0.166667  0.000000  0.000000 
 0.125000  0.208333  0.000000  0.000000  0.083333  0.166667  0.000000  0.000000  0.000000  0.083333  0.000000  0.041667  0.000000  0.000000  0.166667  0.000000  0.000000  0.000000  0.000000  0.125000 
 0.000000  0.000000  0.000000  0.000000  0.083333  0.083333  0.208333  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.083333  0.000000  0.083333  0.041667  0.000000  0.000000  0.375000 
 0.125000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.125000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.250000  0.458333  0.041667  0.000000  0.000000 
 0.000000  0.083333  0.000000  0.000000  0.291667  0.000000  0.000000  0.000000  0.000000  0.125000  0.000000  0.041667  0.000000  0.000000  0.000000  0.041667  0.000000  0.041667  0.083333  0.291667 
 0.083333  0.291667  0.000000  0.000000  0.083333  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.000000  0.000000  0.000000  0.000000  0.083333  0.083333  0.000000  0.250000  0.083333 
 0.416667  0.208333  0.000000  0.000000  0.000000  0.208333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.000000  0.000000  0.125000  0.000000  0.000000 
 0.083333  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.083333  0.000000  0.458333  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.083333  0.208333  0.000000  0.000000 
 0.291667  0.000000  0.000000  0.000000  0.000000  0.166667  0.000000  0.000000  0.000000  0.041667  0.000000  0.125000  0.000000  0.083333  0.000000  0.250000  0.041667  0.000000  0.000000  0.000000 
 0.291667  0.000000  0.000000  0.000000  0.041667  0.166667  0.000000  0.125000  0.000000  0.041667  0.000000  0.000000  0.000000  0.000000  0.000000  0.208333  0.083333  0.041667  0.000000  0.000000 
 0.125000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.875000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.416667  0.083333  0.000000  0.000000  0.000000  0.000000  0.041667  0.000000  0.041667  0.000000  0.000000  0.000000  0.041667  0.000000  0.000000  0.250000  0.083333  0.041667  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.416667  0.000000  0.458333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.041667  0.083333  0.000000  0.000000 
 0.125000  0.041667  0.000000  0.000000  0.000000  0.000000  0.000000  0.166667  0.000000  0.458333  0.041667  0.000000  0.000000  0.000000  0.000000  0.000000  0.083333  0.000000  0.000000  0.083333 
 0.000000  0.000000  0.166667  0.125000  0.000000  0.291667  0.041667  0.000000  0.041667  0.000000  0.000000  0.125000  0.000000  0.041667  0.041667  0.083333  0.041667  0.000000  0.000000  0.000000 
 0.083333  0.000000  0.000000  0.083333  0.000000  0.041667  0.041667  0.083333  0.166667  0.000000  0.000000  0.041667  0.000000  0.041667  0.125000  0.208333  0.041667  0.000000  0.000000  0.041667 
 0.041667  0.000000  0.083333  0.125000  0.083333  0.000000  0.000000  0.125000  0.041667  0.375000  0.041667  0.000000  0.041667  0.000000  0.000000  0.041667  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.250000  0.125000  0.041667  0.083333  0.125000  0.000000  0.000000  0.041667  0.000000  0.041667  0.000000  0.041667  0.041667  0.000000  0.125000  0.000000  0.041667  0.041667 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif GGFGGRPGKEVDLCYTYCALAALAJLGSLD MEME-1 regular expression
--------------------------------------------------------------------------------
GGFGGRPGK[EL][VAP][DH]LC[YH][TS][FY][CW][ACG][LV][AS][AS]L[AS][LI]LGSLD
--------------------------------------------------------------------------------




Time  0.46 secs.

********************************************************************************


********************************************************************************
MOTIF JNKEKLLEYILSCQ MEME-2	width =  14  sites =  21  llr = 383  E-value = 6.1e-021
********************************************************************************
--------------------------------------------------------------------------------
	Motif JNKEKLLEYILSCQ MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  ::::1:1:::11::
pos.-specific     C  ::::::::::::4:
probability       D  12:::::1::::::
matrix            E  1::61::2::::::
                  F  1:::::::3:::::
                  G  ::::1:::::::1:
                  H  :::::1:1::::::
                  I  4::::23::41:::
                  K  ::315:::::21:1
                  L  221::43::22:21
                  M  ::::::::::::::
                  N  :5::::::::::1:
                  P  ::::::::::::::
                  Q  :::::::1:::::5
                  R  ::21::11:::11:
                  S  ::::1::1:116::
                  T  ::1:::::::::::
                  V  ::2::1:::2::::
                  W  ::::::::2:::::
                  Y  ::::::::5:::::

         bits    5.8               
                 5.2               
                 4.6               
                 4.0               
Relative         3.5         *     
Entropy          2.9         *     
(26.3 bits)      2.3  * **   *    *
                 1.7 ******  ** ***
                 1.2 **************
                 0.6 **************
                 0.0 --------------

Multilevel           INKEKLIXYILSCQ
consensus            L R   L FV    
sequence                           
                                   
                                   
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif JNKEKLLEYILSCQ MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                 Site   
-------------             ----- ---------            --------------
RATRABGERB                   66  2.71e-12 VMDLMGQLHR MNKEEILVFIKSCQ HECGGVSASI
BET2_YEAST                  254  5.70e-12 SLAIIGRLDW INYEKLTEFILKCQ DEKKGGISDR
RATRABGERB                  258  6.43e-12 SLKIIGRLHW IDREKLRSFILACQ DEETGGFADR
RATRABGERB                  162  2.61e-11 TLALLGKLDA INVEKAIEFVLSCM NFDGGFGCRP
CAL1_YEAST                  190  6.30e-11 CRSKEDFDEY IDTEKLLGYIMSQQ CYNGAFGAHN
RAM1_YEAST                  278  2.70e-10 SLAILRSMDQ INVEKLLEWSSARQ LQEERGFCGR
PFTB_RAT                    172  4.03e-10 IIGTEEAYNV INREKLLQYLYSLK QPDGSFLMHV
RATRABGERB                  114  1.27e-09 ILTLYDSIHV INVDKVVAYVQSLQ KEDGSFAGDI
BET2_YEAST                    7  3.17e-09     MSGSLT LLKEKHIRYIESLD TNKHNFEYWL
PFTB_RAT                    268  6.39e-09 ALVILKKERS LNLKSLLQWVTSRQ MRFEGGFQGR
RAM1_YEAST                  414  6.96e-09 DVNPVYGLPI ENVRKIIHYFKSNL SSPS      
CAL1_YEAST                  126  1.06e-08 LRDYEYFETI LDKRSLARFVSKCQ RPDRGSFVSC
PFTB_RAT                    220  1.26e-08 VASLTNIITP DLFEGTAEWIARCQ NWEGGIGGVP
BET2_YEAST                   55  1.37e-08 ALCVLDSPET FVKEEVISFVLSCW DDKYGAFAPF
RAM1_YEAST                  229  2.07e-08 IATLLNILTE ELTEGVLNYLKNCQ NYEGGFGSCP
RAM1_YEAST                  330  4.96e-08 ILEAFGYGQC FNKHALRDYILYCC QEKEQPGLRD
RATRABGERB                   18  1.15e-07 VTIKSDAPDT LLLEKHADYIASYG SKKDDYEYCM
RAM1_YEAST                  180  1.44e-07 CDNIDGCWDR IDRKGIYQWLISLK EPNGGFKTCL
PFTB_RAT                     73  1.55e-07 KFNHLVPRLV LQREKHFHYLKRGL RQLTDAYECL
BET2_YEAST                  107  1.93e-07 TYDALDVLGK DRKVRLISFIRGNQ LEDGSFQGDR
CAL1_YEAST                   36  5.20e-07 LLPSSHQGHD VNRMAIIFYSISGL SIFDVNVSAK
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif JNKEKLLEYILSCQ MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
RATRABGERB                        1.2e-07  17_[2]_34_[2]_34_[2]_34_[2]_82_[2]_60
BET2_YEAST                        1.4e-08  6_[2]_34_[2]_38_[2]_133_[2]_58
CAL1_YEAST                        1.1e-08  35_[2]_76_[2]_50_[2]_173
RAM1_YEAST                          5e-08  179_[2]_35_[2]_35_[2]_38_[2]_70_[2]_4
PFTB_RAT                          1.3e-08  72_[2]_85_[2]_34_[2]_34_[2]_156
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif JNKEKLLEYILSCQ MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF JNKEKLLEYILSCQ width=14 seqs=21
RATRABGERB               (   66) MNKEEILVFIKSCQ  1 
BET2_YEAST               (  254) INYEKLTEFILKCQ  1 
RATRABGERB               (  258) IDREKLRSFILACQ  1 
RATRABGERB               (  162) INVEKAIEFVLSCM  1 
CAL1_YEAST               (  190) IDTEKLLGYIMSQQ  1 
RAM1_YEAST               (  278) INVEKLLEWSSARQ  1 
PFTB_RAT                 (  172) INREKLLQYLYSLK  1 
RATRABGERB               (  114) INVDKVVAYVQSLQ  1 
BET2_YEAST               (    7) LLKEKHIRYIESLD  1 
PFTB_RAT                 (  268) LNLKSLLQWVTSRQ  1 
RAM1_YEAST               (  414) ENVRKIIHYFKSNL  1 
CAL1_YEAST               (  126) LDKRSLARFVSKCQ  1 
PFTB_RAT                 (  220) DLFEGTAEWIARCQ  1 
BET2_YEAST               (   55) FVKEEVISFVLSCW  1 
RAM1_YEAST               (  229) ELTEGVLNYLKNCQ  1 
RAM1_YEAST               (  330) FNKHALRDYILYCC  1 
RATRABGERB               (   18) LLLEKHADYIASYG  1 
RAM1_YEAST               (  180) IDRKGIYQWLISLK  1 
PFTB_RAT                 (   73) LQREKHFHYLKRGL  1 
BET2_YEAST               (  107) DRKVRLISFIRGNQ  1 
CAL1_YEAST               (   36) VNRMAIIFYSISGL  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif JNKEKLLEYILSCQ MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 14 n= 1835 bayes= 7.42721 E= 6.1e-021 
  -194   -317     27     33     90   -398   -339    275   -338     92    120   -307   -371   -319   -313   -306   -180     36   -324   -282 
  -222   -483    147   -172   -406   -315   -236   -354   -129     52   -272    359   -329     41     35   -228   -207    -34   -450   -365 
  -188   -337   -387   -289      7   -375   -285   -136    226    -18   -114   -245   -348   -225    230   -277     96    162   -335      8 
  -196   -516    -17    314   -424   -350     51   -371     97   -398     97   -168   -309   -122    114   -242   -204    -38   -455   -372 
    57   -486   -252     66   -412     69   -223   -363    316   -386   -255   -149   -317   -125     56     23   -197   -315   -430   -355 
   -17   -311   -484   -390   -214   -395    194    176   -341    175    -85   -308   -368   -318   -311   -304     16    135   -322   -280 
   110   -299   -471   -377     14   -381   -321    227   -327    119    -77   -294   -355   -305     98   -289     19     30   -308     10 
    -5   -429     47    147    -18    -74    136   -300    -66   -327   -191     61   -248    170    112     72   -129    -37   -374   -290 
  -579   -589   -670   -653    290   -651   -301   -492   -581   -477   -422   -459   -601   -496   -506   -572   -535   -493    330    351 
  -272   -391   -471   -429    -53   -471   -431    331   -374     30    -82   -346   -434   -383   -376    -56   -242    175   -401   -346 
    61   -413   -197      5   -319   -288   -180     55    173     72     96   -103   -254     52     39     26     21   -226   -368     -4 
    40   -393   -233   -177   -373    -93   -230   -345     73   -379   -242     46   -291   -148     91    273    -32   -308   -411    -25 
  -199    322   -288   -222   -303     15   -252   -214   -123     57   -175    136   -334     36    117   -250   -188   -194   -377      6 
  -198    -75   -116   -128   -366   -156    -97   -296     13    -63     37   -167   -289    400   -154   -252   -207   -271     23   -359 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif JNKEKLLEYILSCQ MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 14 nsites= 21 E= 6.1e-021 
 0.000000  0.000000  0.095238  0.095238  0.095238  0.000000  0.000000  0.380952  0.000000  0.238095  0.047619  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.047619  0.000000  0.000000 
 0.000000  0.000000  0.190476  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.190476  0.000000  0.476190  0.000000  0.047619  0.047619  0.000000  0.000000  0.047619  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.047619  0.000000  0.000000  0.000000  0.285714  0.095238  0.000000  0.000000  0.000000  0.000000  0.238095  0.000000  0.095238  0.190476  0.000000  0.047619 
 0.000000  0.000000  0.047619  0.619048  0.000000  0.000000  0.047619  0.000000  0.095238  0.000000  0.047619  0.000000  0.000000  0.000000  0.095238  0.000000  0.000000  0.047619  0.000000  0.000000 
 0.095238  0.000000  0.000000  0.095238  0.000000  0.142857  0.000000  0.000000  0.523810  0.000000  0.000000  0.000000  0.000000  0.000000  0.047619  0.095238  0.000000  0.000000  0.000000  0.000000 
 0.047619  0.000000  0.000000  0.000000  0.000000  0.000000  0.142857  0.190476  0.000000  0.428571  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.047619  0.142857  0.000000  0.000000 
 0.142857  0.000000  0.000000  0.000000  0.047619  0.000000  0.000000  0.285714  0.000000  0.285714  0.000000  0.000000  0.000000  0.000000  0.095238  0.000000  0.047619  0.047619  0.000000  0.047619 
 0.047619  0.000000  0.095238  0.190476  0.047619  0.047619  0.095238  0.000000  0.000000  0.000000  0.000000  0.047619  0.000000  0.142857  0.095238  0.142857  0.000000  0.047619  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.190476  0.476190 
 0.000000  0.000000  0.000000  0.000000  0.047619  0.000000  0.000000  0.428571  0.000000  0.190476  0.000000  0.000000  0.000000  0.000000  0.000000  0.095238  0.000000  0.238095  0.000000  0.000000 
 0.095238  0.000000  0.000000  0.047619  0.000000  0.000000  0.000000  0.095238  0.190476  0.238095  0.047619  0.000000  0.000000  0.047619  0.047619  0.095238  0.047619  0.000000  0.000000  0.047619 
 0.095238  0.000000  0.000000  0.000000  0.000000  0.047619  0.000000  0.000000  0.095238  0.000000  0.000000  0.047619  0.000000  0.000000  0.095238  0.571429  0.000000  0.000000  0.000000  0.047619 
 0.000000  0.428571  0.000000  0.000000  0.000000  0.095238  0.000000  0.000000  0.000000  0.190476  0.000000  0.095238  0.000000  0.047619  0.095238  0.000000  0.000000  0.000000  0.000000  0.047619 
 0.000000  0.047619  0.047619  0.000000  0.000000  0.047619  0.000000  0.000000  0.095238  0.142857  0.047619  0.000000  0.000000  0.523810  0.000000  0.000000  0.000000  0.000000  0.047619  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif JNKEKLLEYILSCQ MEME-2 regular expression
--------------------------------------------------------------------------------
[IL]N[KR]EKL[IL]X[YF][IV]LSCQ
--------------------------------------------------------------------------------




Time  0.71 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
RAM1_YEAST                       1.09e-19  144_[1(8.68e-17)]_5_[2(1.44e-07)]_4_\
    [1(1.67e-13)]_1_[2(2.07e-08)]_4_[1(4.93e-17)]_1_[2(2.70e-10)]_4_\
    [1(2.87e-16)]_4_[2(4.96e-08)]_5_[1(5.11e-13)]_35_[2(6.96e-09)]_4
PFTB_RAT                         5.87e-22  72_[2(1.55e-07)]_51_[1(2.44e-19)]_4_\
    [2(4.03e-10)]_3_[1(3.29e-14)]_1_[2(1.26e-08)]_3_[1(1.56e-19)]_1_\
    [2(6.39e-09)]_4_[1(2.62e-16)]_32_[1(7.66e-15)]_60
BET2_YEAST                       2.36e-26  6_[2(3.17e-09)]_3_[1(2.82e-10)]_1_\
    [2(1.37e-08)]_4_[1(7.21e-14)]_4_[2(1.93e-07)]_3_[1(2.77e-17)]_18_\
    [1(2.53e-18)]_21_[1(6.98e-22)]_1_[2(5.70e-12)]_4_[1(7.19e-17)]_24
RATRABGERB                       7.64e-26  17_[2(1.15e-07)]_34_[2(2.71e-12)]_3_\
    [1(2.21e-14)]_1_[2(1.27e-09)]_3_[1(8.90e-19)]_1_[2(2.61e-11)]_3_\
    [1(6.47e-19)]_18_[1(4.67e-21)]_1_[2(6.43e-12)]_4_[1(1.27e-17)]_26
CAL1_YEAST                       5.59e-23  35_[2(5.20e-07)]_76_[2(1.06e-08)]_\
    50_[2(6.30e-11)]_1_[1(1.14e-13)]_40_[1(1.25e-19)]_22_[1(4.42e-13)]_20
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-Mac-Mini.local

********************************************************************************
