********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.4.0 (Release date: Tue Mar 9 17:38:20 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
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********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= common/adh.s
CONTROL SEQUENCES= Primary sequences shuffled preserving 2-mers
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
2BHD_STREX               1.0000    255  3BHD_COMTE               1.0000    253  
ADH_DROME                1.0000    255  AP27_MOUSE               1.0000    244  
BA72_EUBSP               1.0000    249  BDH_HUMAN                1.0000    343  
BPHB_PSEPS               1.0000    275  BUDC_KLETE               1.0000    241  
DHES_HUMAN               1.0000    327  DHGB_BACME               1.0000    262  
DHII_HUMAN               1.0000    292  DHMA_FLAS1               1.0000    270  
ENTA_ECOLI               1.0000    248  FIXR_BRAJA               1.0000    278  
GUTD_ECOLI               1.0000    259  HDE_CANTR                1.0000    906  
HDHA_ECOLI               1.0000    255  LIGD_PSEPA               1.0000    305  
NODG_RHIME               1.0000    245  RIDH_KLEAE               1.0000    249  
YINL_LISMO               1.0000    248  YRTP_BACSU               1.0000    238  
CSGA_MYXXA               1.0000    166  DHB2_HUMAN               1.0000    387  
DHB3_HUMAN               1.0000    310  DHCA_HUMAN               1.0000    276  
FABI_ECOLI               1.0000    262  FVT1_HUMAN               1.0000    332  
HMTR_LEIMA               1.0000    287  MAS1_AGRRA               1.0000    476  
PCR_PEA                  1.0000    399  RFBB_NEIGO               1.0000    346  
YURA_MYXXA               1.0000    258  
********************************************************************************

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COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -nsites 27 common/adh.s -oc results/meme32 -mod zoops -protein -nmotifs 2 -objfun se -w 12 -hsfrac 0.6 -shuf 2 -nostatus -mpi 

model:  mod=         zoops    nmotifs=         2    evt=           inf
objective function:           em=       Selective mHG
                              starts=   log likelihood ratio (LLR)
width:  minw=           12    maxw=           12
nsites: minsites=       27    maxsites=       27    wnsites=       0.8
theta:  spmap=         pam    spfuzz=        120
em:     prior=       megap    b=           49975    maxiter=        50
        distance=    1e-05
data:   n=            9996    N=              33
sample: seed=            0    hsfrac=        0.6
        searchsize=   9996    norand=         no    csites=         -1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.111 C 0.0121 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0182 I 0.0566 K 0.0518 
L 0.0919 M 0.0272 N 0.0405 P 0.0405 Q 0.0294 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.0095 Y 0.027 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.111 C 0.0122 D 0.0502 E 0.0553 F 0.0359 G 0.0898 H 0.0183 I 0.0566 K 0.0518 
L 0.0919 M 0.0273 N 0.0405 P 0.0405 Q 0.0295 R 0.0494 S 0.0637 T 0.0565 V 0.083 
W 0.00959 Y 0.0271 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF XDLKGKNVLVTG MEME-1	width =  12  sites =  27  llr = 400  p-value = 8.3e-006  E-value = 8.3e-006
********************************************************************************
--------------------------------------------------------------------------------
	Motif XDLKGKNVLVTG MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :::1::12::::
pos.-specific     C  ::::::::::::
probability       D  :2::::::::::
matrix            E  12::::::::::
                  F  1:::::::::::
                  G  1::15:1::::9
                  H  ::::::1:::::
                  I  ::1::::313::
                  K  1::1161:::::
                  L  1:7::1::4:::
                  M  1:::::::::::
                  N  1:::::2:::2:
                  P  :1::1:::::::
                  Q  1::1::::::::
                  R  11:1::::2:::
                  S  :1:1::::::::
                  T  11:1::1:::8:
                  V  1:1:::2416::
                  W  ::::::::::::
                  Y  ::::::::::::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4           **
(21.4 bits)      2.7          ***
                 2.0   *  * * ***
                 1.3  ** ** *****
                 0.7 ************
                 0.0 ------------

Multilevel           XDLXGKXVLVTG
consensus                   I I  
sequence                         
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif XDLKGKNVLVTG MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
ENTA_ECOLI                    1  1.88e-10          . MDFSGKNVWVTG AGKGIGYATA
DHII_HUMAN                   30  1.88e-10 YYSANEEFRP EMLQGKKVIVTG ASKGIGREMA
2BHD_STREX                    2  2.22e-10          M NDLSGKTVIITG GARGLGAEAA
3BHD_COMTE                    2  8.45e-10          T NRLQGKVALVTG GASGVGLEVV
DHGB_BACME                    3  1.87e-09         MY KDLEGKVVVITG SSTGLGKSMA
YRTP_BACSU                    2  3.45e-09          M QSLQHKTALITG GGRGIGRATA
HDHA_ECOLI                  175  3.89e-09 AASHLVRNMA FDLGEKNIRVNG IAPGAILTDA
FABI_ECOLI                    2  6.90e-09          M GFLSGKRILVTG VASKLSIAYG
BPHB_PSEPS                    1  7.72e-09          . MKLKGEAVLITG GASGLGRALV
HDE_CANTR                   318  9.61e-09 PANDASGAPT VSLKDKVVLITG AGAGLGKEYA
YINL_LISMO                    1  1.47e-08          . MTIKNKVIIITG ASSGIGKATA
RFBB_NEIGO                    2  2.73e-08          M QTEGKKNILVTG GAGFIGSAVV
NODG_RHIME                    2  3.68e-08          M FELTGRKALVTG ASGAIGGAIA
DHMA_FLAS1                   10  5.41e-08  TTAGVSRRP GRLAGKAAIVTG AAGGIGRATV
RIDH_KLEAE                   10  7.89e-08  MKHSVSSMN TSLSGKVAAITG AASGIGLECA
PCR_PEA                      82  2.10e-07 AVNKSSSEGK KTLRKGNVVITG ASSGLGLATA
BDH_HUMAN                    51  3.47e-07 IGRRTYASAA EPVGSKAVLVTG CDSGFGFSLA
AP27_MOUSE                  165  3.47e-07 AMTMLTKAMA MELGPHKIRVNS VNPTVVLTDM
HMTR_LEIMA                  209  3.77e-07 ALEGLTRSAA LELAPLQIRVNG VGPGLSVLVD
DHB2_HUMAN                   78  4.08e-07 MYTYLSGQEL LPVDQKAVLVTG GDCGLGHALC
YURA_MYXXA                  176  4.80e-07 FLSTFMESLR VDLRGTGVRVTC IYPGFVKSEL
FVT1_HUMAN                   28  7.67e-07 MVSPLISPKP LALPGAHVVVTG GSSGIGKCIA
BUDC_KLETE                  168  2.00e-06 AVRGLTQTAA RDLAPLGITVNG FCPGIVKTPM
BA72_EUBSP                  173  2.15e-06 SVIGLTHGLG REIIRKNIRVVG VAPGVVNTDM
GUTD_ECOLI                  243  2.65e-06 MLLFYASPKA SYCTGQSINVTG GQVMF     
ADH_DROME                    81  5.56e-06 ETTKLLKTIF AQLKTVDVLING AGILDDHQIE
MAS1_AGRRA                  359  1.53e-05 YINCVAPLRM TELCLPHLYETG SGRIVNINSM
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif XDLKGKNVLVTG MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
ENTA_ECOLI                        1.9e-10  [1]_236
DHII_HUMAN                        1.9e-10  29_[1]_251
2BHD_STREX                        2.2e-10  1_[1]_242
3BHD_COMTE                        8.4e-10  1_[1]_240
DHGB_BACME                        1.9e-09  2_[1]_248
YRTP_BACSU                        3.5e-09  1_[1]_225
HDHA_ECOLI                        3.9e-09  174_[1]_69
FABI_ECOLI                        6.9e-09  1_[1]_249
BPHB_PSEPS                        7.7e-09  [1]_263
HDE_CANTR                         9.6e-09  317_[1]_577
YINL_LISMO                        1.5e-08  [1]_236
RFBB_NEIGO                        2.7e-08  1_[1]_333
NODG_RHIME                        3.7e-08  1_[1]_232
DHMA_FLAS1                        5.4e-08  9_[1]_249
RIDH_KLEAE                        7.9e-08  9_[1]_228
PCR_PEA                           2.1e-07  81_[1]_306
BDH_HUMAN                         3.5e-07  50_[1]_281
AP27_MOUSE                        3.5e-07  164_[1]_68
HMTR_LEIMA                        3.8e-07  208_[1]_67
DHB2_HUMAN                        4.1e-07  77_[1]_298
YURA_MYXXA                        4.8e-07  175_[1]_71
FVT1_HUMAN                        7.7e-07  27_[1]_293
BUDC_KLETE                          2e-06  167_[1]_62
BA72_EUBSP                        2.1e-06  172_[1]_65
GUTD_ECOLI                        2.6e-06  242_[1]_5
ADH_DROME                         5.6e-06  80_[1]_163
MAS1_AGRRA                        1.5e-05  358_[1]_106
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif XDLKGKNVLVTG MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF XDLKGKNVLVTG width=12 seqs=27
ENTA_ECOLI               (    1) MDFSGKNVWVTG  1 
DHII_HUMAN               (   30) EMLQGKKVIVTG  1 
2BHD_STREX               (    2) NDLSGKTVIITG  1 
3BHD_COMTE               (    2) NRLQGKVALVTG  1 
DHGB_BACME               (    3) KDLEGKVVVITG  1 
YRTP_BACSU               (    2) QSLQHKTALITG  1 
HDHA_ECOLI               (  175) FDLGEKNIRVNG  1 
FABI_ECOLI               (    2) GFLSGKRILVTG  1 
BPHB_PSEPS               (    1) MKLKGEAVLITG  1 
HDE_CANTR                (  318) VSLKDKVVLITG  1 
YINL_LISMO               (    1) MTIKNKVIIITG  1 
RFBB_NEIGO               (    2) QTEGKKNILVTG  1 
NODG_RHIME               (    2) FELTGRKALVTG  1 
DHMA_FLAS1               (   10) GRLAGKAAIVTG  1 
RIDH_KLEAE               (   10) TSLSGKVAAITG  1 
PCR_PEA                  (   82) KTLRKGNVVITG  1 
BDH_HUMAN                (   51) EPVGSKAVLVTG  1 
AP27_MOUSE               (  165) MELGPHKIRVNS  1 
HMTR_LEIMA               (  209) LELAPLQIRVNG  1 
DHB2_HUMAN               (   78) LPVDQKAVLVTG  1 
YURA_MYXXA               (  176) VDLRGTGVRVTC  1 
FVT1_HUMAN               (   28) LALPGAHVVVTG  1 
BUDC_KLETE               (  168) RDLAPLGITVNG  1 
BA72_EUBSP               (  173) REIIRKNIRVVG  1 
GUTD_ECOLI               (  243) SYCTGQSINVTG  1 
ADH_DROME                (   81) AQLKTVDVLING  1 
MAS1_AGRRA               (  359) TELCLPHLYETG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif XDLKGKNVLVTG MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 8.3e-006 
  -119   -293   -186     56     75    -45   -128   -332     68      5    212     81   -274    135     57    -38     36    -34   -307   -256 
  -119   -296    188    159    -17   -335   -127   -337      8   -324     28   -147     63     67     57     73     83   -330   -308     29 
  -415     68   -499   -142    -38   -544   -333      0   -390    306    -70   -426   -393   -288   -359   -398   -336    -67   -288   -311 
    -7    130    -24     -5   -333     45   -127    -74    144   -324   -257   -147    -23    181     57    108     36   -330   -308   -256 
  -246   -296    -25     -5   -334    208     98   -339     68   -127   -258      8    117     66    -14    -38    -37   -331   -309   -257 
  -121   -298   -190     -8   -337   -129     96   -340    324    -48   -261   -152    -25     64    -13   -168    -39   -119   -311   -260 
    27   -296    -24   -114   -333    -45    182   -338    111   -325   -257    195   -273     67    -14    -38     36     86   -309   -256 
    65   -337   -723   -684   -443   -743   -684    254   -676   -108   -354   -650   -664   -652   -716   -627   -436    240   -624   -560 
  -129   -168   -469   -391   -205   -436   -277    136   -358    186   -145    -24   -382   -294    167   -289    -40     52    175     41 
  -494   -334   -708    -68   -452   -743   -680    254   -670   -338   -362   -648   -656   -654   -706   -630   -432    288   -643   -574 
  -364   -242   -411   -450   -430   -494   -357   -340   -372   -456   -321    177   -428   -315   -388   -101    372   -128   -405   -446 
  -310     68   -313   -374   -480    332   -337   -499   -357   -542   -445   -268   -417   -369   -360   -122   -396   -480   -373   -425 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif XDLKGKNVLVTG MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 8.3e-006 
 0.037037  0.000000  0.000000  0.074074  0.074074  0.074074  0.000000  0.000000  0.074074  0.111111  0.148148  0.074074  0.000000  0.074074  0.074074  0.037037  0.074074  0.074074  0.000000  0.000000 
 0.037037  0.000000  0.222222  0.185185  0.037037  0.000000  0.000000  0.000000  0.037037  0.000000  0.037037  0.000000  0.074074  0.037037  0.074074  0.111111  0.111111  0.000000  0.000000  0.037037 
 0.000000  0.037037  0.000000  0.037037  0.037037  0.000000  0.000000  0.074074  0.000000  0.740741  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000 
 0.111111  0.037037  0.037037  0.037037  0.000000  0.148148  0.000000  0.037037  0.148148  0.000000  0.000000  0.000000  0.037037  0.111111  0.074074  0.148148  0.074074  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.037037  0.000000  0.481481  0.037037  0.000000  0.074074  0.037037  0.000000  0.037037  0.111111  0.037037  0.037037  0.037037  0.037037  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.037037  0.000000  0.037037  0.037037  0.000000  0.592593  0.074074  0.000000  0.000000  0.037037  0.037037  0.037037  0.000000  0.037037  0.037037  0.000000  0.000000 
 0.148148  0.000000  0.037037  0.000000  0.000000  0.074074  0.074074  0.000000  0.111111  0.000000  0.000000  0.185185  0.000000  0.037037  0.037037  0.037037  0.074074  0.185185  0.000000  0.000000 
 0.185185  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.333333  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.444444  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.148148  0.000000  0.370370  0.000000  0.037037  0.000000  0.000000  0.185185  0.000000  0.037037  0.111111  0.037037  0.037037 
 0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.333333  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.629630  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.185185  0.000000  0.000000  0.000000  0.000000  0.777778  0.037037  0.000000  0.000000 
 0.000000  0.037037  0.000000  0.000000  0.000000  0.925926  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif XDLKGKNVLVTG MEME-1 regular expression
--------------------------------------------------------------------------------
XDLXGKX[VI]L[VI]TG
--------------------------------------------------------------------------------




Time  0.17 secs.

********************************************************************************


********************************************************************************
MOTIF ASSGIGKATAKA MEME-2	width =  12  sites =  27  llr = 427  p-value = 4.8e-003  E-value = 4.8e-003
********************************************************************************
--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  521::::617:2
pos.-specific     C  1:::::::::::
probability       D  :1:::::1:::1
matrix            E  :::::::2::11
                  F  ::::::1:::::
                  G  3319:a::::::
                  H  ::::::1::::1
                  I  ::::7:::3:1:
                  K  ::2:::3:::3:
                  L  ::::3:2:1:11
                  M  ::::::::1:::
                  N  :1::::::::::
                  P  ::::::::::::
                  Q  ::::::::::::
                  R  ::2:::2:::21
                  S  133::::1:1::
                  T  ::::::::3::1
                  V  :::::::::1::
                  W  ::::::::::::
                  Y  ::::::::1:::

         bits    6.7             
                 6.0             
                 5.4             
                 4.7             
Relative         4.0             
Entropy          3.4    * *      
(22.8 bits)      2.7    ***      
                 2.0 *  *** ***  
                 1.3 *********** 
                 0.7 ************
                 0.0 ------------

Multilevel           ASSGIGKATAKX
consensus            GG  L R I   
sequence              A          
                                 
                                 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value                Site  
-------------             ----- ---------            ------------
FIXR_BRAJA                   44  6.73e-11 GEPKVMLLTG ASRGIGHATAKL FSEAGWRIIS
DHII_HUMAN                   42  1.51e-10 LQGKKVIVTG ASKGIGREMAYH LAKMGAHVVV
FVT1_HUMAN                   40  2.36e-10 LPGAHVVVTG GSSGIGKCIAIE CYKQGAFITL
YINL_LISMO                   13  3.60e-10 IKNKVIIITG ASSGIGKATALL LAEKGAKLVL
BUDC_KLETE                   10  4.14e-10  MQKVALVTG AGQGIGKAIALR LVKDGFAVAI
YRTP_BACSU                   14  9.04e-10 LQHKTALITG GGRGIGRATALA LAKEGVNIGL
PCR_PEA                      94  1.02e-09 LRKGNVVITG ASSGLGLATAKA LAESGKWHVI
ENTA_ECOLI                   13  3.22e-09 FSGKNVWVTG AGKGIGYATALA FVEAGAKVTG
RIDH_KLEAE                   22  4.93e-09 LSGKVAAITG AASGIGLECART LLGAGAKVVL
HDHA_ECOLI                   19  9.90e-09 LDGKCAIITG AGAGIGKEIAIT FATAGASVVV
AP27_MOUSE                   15  9.90e-09 FSGLRALVTG AGKGIGRDTVKA LHASGAKVVA
HDE_CANTR                   330  1.09e-08 LKDKVVLITG AGAGLGKEYAKW FAKYGAKVVV
DHCA_HUMAN                   12  2.28e-08 SGIHVALVTG GNKGIGLAIVRD LCRLFSGDVV
DHES_HUMAN                   10  2.49e-08  ARTVVLITG CSSGIGLHLAVR LASDPSQSFK
DHMA_FLAS1                   22  3.23e-08 LAGKAAIVTG AAGGIGRATVEA YLREGASVVA
DHB3_HUMAN                   56  5.36e-08 SMGQWAVITG AGDGIGKAYSFE LAKRGLNVVL
BDH_HUMAN                    63  7.42e-08 VGSKAVLVTG CDSGFGFSLAKH LHSKGFLVFA
DHB2_HUMAN                   90  1.02e-07 VDQKAVLVTG GDCGLGHALCKY LDELGFTVFA
MAS1_AGRRA                  253  1.10e-07 HQSPVILVSG SNRGVGKAIAED LIAHGYRLSL
DHGB_BACME                   15  1.10e-07 LEGKVVVITG SSTGLGKSMAIR FATEKAKVVV
BA72_EUBSP                   14  1.19e-07 VQDKVTIITG GTRGIGFAAAKI FIDNGAKVSI
BPHB_PSEPS                   13  2.92e-07 LKGEAVLITG GASGLGRALVDR FVAEAKVAVL
ADH_DROME                    14  7.25e-07 LTNKNVIFVA GLGGIGLDTSKE LLKRDLKNLV
2BHD_STREX                   14  8.87e-07 LSGKTVIITG GARGLGAEAARQ AVAAGARVVL
NODG_RHIME                   14  1.93e-06 LTGRKALVTG ASGAIGGAIARV LHAQGAIVGL
HMTR_LEIMA                   14  2.06e-06 PTVPVALVTG AAKRLGRSIAEG LHAEGYAVCL
FABI_ECOLI                   20  7.28e-06 LVTGVASKLS IAYGIAQAMHRE GAELAFTYQN
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
FIXR_BRAJA                        6.7e-11  43_[2]_223
DHII_HUMAN                        1.5e-10  41_[2]_239
FVT1_HUMAN                        2.4e-10  39_[2]_281
YINL_LISMO                        3.6e-10  12_[2]_224
BUDC_KLETE                        4.1e-10  9_[2]_220
YRTP_BACSU                          9e-10  13_[2]_213
PCR_PEA                             1e-09  93_[2]_294
ENTA_ECOLI                        3.2e-09  12_[2]_224
RIDH_KLEAE                        4.9e-09  21_[2]_216
HDHA_ECOLI                        9.9e-09  18_[2]_225
AP27_MOUSE                        9.9e-09  14_[2]_218
HDE_CANTR                         1.1e-08  329_[2]_565
DHCA_HUMAN                        2.3e-08  11_[2]_253
DHES_HUMAN                        2.5e-08  9_[2]_306
DHMA_FLAS1                        3.2e-08  21_[2]_237
DHB3_HUMAN                        5.4e-08  55_[2]_243
BDH_HUMAN                         7.4e-08  62_[2]_269
DHB2_HUMAN                          1e-07  89_[2]_286
MAS1_AGRRA                        1.1e-07  252_[2]_212
DHGB_BACME                        1.1e-07  14_[2]_236
BA72_EUBSP                        1.2e-07  13_[2]_224
BPHB_PSEPS                        2.9e-07  12_[2]_251
ADH_DROME                         7.2e-07  13_[2]_230
2BHD_STREX                        8.9e-07  13_[2]_230
NODG_RHIME                        1.9e-06  13_[2]_220
HMTR_LEIMA                        2.1e-06  13_[2]_262
FABI_ECOLI                        7.3e-06  19_[2]_231
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF ASSGIGKATAKA width=12 seqs=27
FIXR_BRAJA               (   44) ASRGIGHATAKL  1 
DHII_HUMAN               (   42) ASKGIGREMAYH  1 
FVT1_HUMAN               (   40) GSSGIGKCIAIE  1 
YINL_LISMO               (   13) ASSGIGKATALL  1 
BUDC_KLETE               (   10) AGQGIGKAIALR  1 
YRTP_BACSU               (   14) GGRGIGRATALA  1 
PCR_PEA                  (   94) ASSGLGLATAKA  1 
ENTA_ECOLI               (   13) AGKGIGYATALA  1 
RIDH_KLEAE               (   22) AASGIGLECART  1 
HDHA_ECOLI               (   19) AGAGIGKEIAIT  1 
AP27_MOUSE               (   15) AGKGIGRDTVKA  1 
HDE_CANTR                (  330) AGAGLGKEYAKW  1 
DHCA_HUMAN               (   12) GNKGIGLAIVRD  1 
DHES_HUMAN               (   10) CSSGIGLHLAVR  1 
DHMA_FLAS1               (   22) AAGGIGRATVEA  1 
DHB3_HUMAN               (   56) AGDGIGKAYSFE  1 
BDH_HUMAN                (   63) CDSGFGFSLAKH  1 
DHB2_HUMAN               (   90) GDCGLGHALCKY  1 
MAS1_AGRRA               (  253) SNRGVGKAIAED  1 
DHGB_BACME               (   15) SSTGLGKSMAIR  1 
BA72_EUBSP               (   14) GTRGIGFAAAKI  1 
BPHB_PSEPS               (   13) GASGLGRALVDR  1 
ADH_DROME                (   14) GLGGIGLDTSKE  1 
2BHD_STREX               (   14) GARGLGAEAARQ  1 
NODG_RHIME               (   14) ASGAIGGAIARV  1 
HMTR_LEIMA               (   14) AAKRLGRSIAEG  1 
FABI_ECOLI               (   20) IAYGIAQAMHRE  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 12 n= 9632 bayes= 8.47468 E= 4.8e-003 
   223    250   -574   -550   -520    159   -499    -71   -558   -534   -466   -476   -462   -465   -531     30   -330   -404   -502   -548 
    91   -369     65   -274   -502    142   -244   -532   -284   -137   -469    100   -408   -247   -355    212    -51   -510   -485   -410 
   -53    130    -24   -115   -334      7   -127   -338    170   -325   -258   -148   -274     67    168    179    -36   -331   -309     29 
  -189   -323   -304   -366   -474    332   -329   -493   -348   -537   -439   -260   -414   -363   -121   -282   -399   -479   -366   -418 
  -526   -371   -638   -613     -1   -695   -546    350   -578    142   -195   -574   -600   -508   -594   -563   -443    -55   -420   -432 
  -183   -327   -318   -379   -485    335   -342   -505   -362   -547   -451   -274   -423   -375   -366   -290   -404   -487   -378   -431 
  -130   -322   -237   -161     80   -130    185   -356    237     78   -286   -190   -316     61    200   -208   -227   -355   -335     31 
   233    130     31    138   -395   -310     68   -390   -275   -396   -335   -209   -400   -233   -328     63   -269   -300   -380   -377 
   -55    150   -475   -397   -206   -439   -281    207   -364     70    191   -353   -385   -299   -359   -293    219   -163   -248    130 
   270    101   -384   -338   -316   -245      1   -301   -338   -316   -255   -342   -426   -307   -344      4   -227      8   -304   -354 
  -259   -253    -34     94     -8   -358   -156     78    229     50   -222   -182   -298   -103    169   -190   -198    -98   -292     32 
    55   -293     49    132   -330   -127    182    -73    -98    -46   -254   -149   -274     66    140   -163     36   -116    162     29 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 12 nsites= 27 E= 4.8e-003 
 0.518519  0.074074  0.000000  0.000000  0.000000  0.296296  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.000000  0.000000  0.000000 
 0.222222  0.000000  0.074074  0.000000  0.000000  0.259259  0.000000  0.000000  0.000000  0.037037  0.000000  0.074074  0.000000  0.000000  0.000000  0.296296  0.037037  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.037037  0.000000  0.000000  0.111111  0.000000  0.000000  0.185185  0.000000  0.000000  0.000000  0.000000  0.037037  0.185185  0.259259  0.037037  0.000000  0.000000  0.037037 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.925926  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.666667  0.000000  0.259259  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.000000  0.962963  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000 
 0.037037  0.000000  0.000000  0.000000  0.074074  0.037037  0.074074  0.000000  0.296296  0.185185  0.000000  0.000000  0.000000  0.037037  0.222222  0.000000  0.000000  0.000000  0.000000  0.037037 
 0.555556  0.037037  0.074074  0.185185  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.111111  0.000000  0.000000  0.000000  0.000000 
 0.074074  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.259259  0.000000  0.148148  0.111111  0.000000  0.000000  0.000000  0.000000  0.000000  0.296296  0.000000  0.000000  0.074074 
 0.703704  0.037037  0.000000  0.000000  0.000000  0.000000  0.037037  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.000000  0.074074  0.000000  0.148148  0.000000  0.000000 
 0.000000  0.000000  0.037037  0.111111  0.037037  0.000000  0.000000  0.111111  0.296296  0.148148  0.000000  0.000000  0.000000  0.000000  0.185185  0.000000  0.000000  0.037037  0.000000  0.037037 
 0.185185  0.000000  0.074074  0.148148  0.000000  0.037037  0.074074  0.037037  0.000000  0.074074  0.000000  0.000000  0.000000  0.037037  0.148148  0.000000  0.074074  0.037037  0.037037  0.037037 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif ASSGIGKATAKA MEME-2 regular expression
--------------------------------------------------------------------------------
[AG][SGA]SG[IL]G[KR]A[TI]AKX
--------------------------------------------------------------------------------




Time  0.30 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
2BHD_STREX                       3.06e-10  1_[1(2.22e-10)]_[2(8.87e-07)]_142_\
    [1(4.65e-05)]_76
3BHD_COMTE                       1.07e-08  1_[1(8.45e-10)]_[2(9.69e-06)]_50_\
    [1(1.73e-05)]_166
ADH_DROME                        3.89e-06  13_[2(7.25e-07)]_55_[1(5.56e-06)]_\
    163
AP27_MOUSE                       4.37e-09  2_[1(1.12e-05)]_[2(9.90e-09)]_138_\
    [1(3.47e-07)]_68
BA72_EUBSP                       2.76e-07  1_[1(7.23e-05)]_[2(1.19e-07)]_147_\
    [1(2.15e-06)]_65
BDH_HUMAN                        5.87e-08  50_[1(3.47e-07)]_[2(7.42e-08)]_269
BPHB_PSEPS                       3.70e-09  [1(7.72e-09)]_[2(2.92e-07)]_251
BUDC_KLETE                       1.09e-09  9_[2(4.14e-10)]_53_[1(6.48e-05)]_81_\
    [1(2.00e-06)]_62
DHES_HUMAN                       1.75e-06  9_[2(2.49e-08)]_108_[1(4.15e-05)]_\
    186
DHGB_BACME                       3.38e-10  2_[1(1.87e-09)]_[2(1.10e-07)]_149_\
    [1(8.97e-05)]_75
DHII_HUMAN                       7.78e-14  29_[1(1.88e-10)]_[2(1.51e-10)]_239
DHMA_FLAS1                       2.80e-09  9_[1(5.41e-08)]_[2(3.23e-08)]_48_\
    [1(2.94e-05)]_87_[1(6.48e-05)]_78
ENTA_ECOLI                       1.09e-12  [1(1.88e-10)]_[2(3.22e-09)]_224
FIXR_BRAJA                       3.88e-08  43_[2(6.73e-11)]_223
GUTD_ECOLI                       4.63e-04  242_[1(2.65e-06)]_5
HDE_CANTR                        2.03e-09  3_[1(1.14e-07)]_[2(6.87e-06)]_290_\
    [1(9.61e-09)]_[2(1.09e-08)]_184_[1(6.85e-05)]_369
HDHA_ECOLI                       6.37e-11  6_[1(7.10e-07)]_[2(9.90e-09)]_53_\
    [1(8.97e-05)]_79_[1(3.89e-09)]_69
LIGD_PSEPA                       2.10e-03  1_[1(9.30e-06)]_292
NODG_RHIME                       7.92e-08  1_[1(3.68e-08)]_[2(1.93e-06)]_50_\
    [1(3.71e-05)]_80_[1(1.95e-05)]_49_[1(6.14e-05)]_5
RIDH_KLEAE                       5.62e-10  9_[1(7.89e-08)]_[2(4.93e-09)]_216
YINL_LISMO                       8.90e-12  [1(1.47e-08)]_[2(3.60e-10)]_224
YRTP_BACSU                       4.90e-12  1_[1(3.45e-09)]_[2(9.04e-10)]_145_\
    [1(6.14e-05)]_56
CSGA_MYXXA                       3.30e-01  166
DHB2_HUMAN                       1.17e-07  77_[1(4.08e-07)]_[2(1.02e-07)]_286
DHB3_HUMAN                       3.85e-05  55_[2(5.36e-08)]_243
DHCA_HUMAN                       4.64e-06  11_[2(2.28e-08)]_253
FABI_ECOLI                       6.51e-08  1_[1(6.90e-09)]_6_[2(7.28e-06)]_231
FVT1_HUMAN                       4.79e-10  27_[1(7.67e-07)]_[2(2.36e-10)]_150_\
    [1(6.85e-05)]_119
HMTR_LEIMA                       1.04e-06  13_[2(2.06e-06)]_183_[1(3.77e-07)]_\
    67
MAS1_AGRRA                       5.75e-06  252_[2(1.10e-07)]_94_[1(1.53e-05)]_\
    106
PCR_PEA                          8.14e-10  81_[1(2.10e-07)]_[2(1.02e-09)]_294
RFBB_NEIGO                       7.78e-06  1_[1(2.73e-08)]_333
YURA_MYXXA                       6.11e-04  175_[1(4.80e-07)]_71
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because requested number of motifs (2) found.
********************************************************************************

CPU: Timothys-Mac-Mini.local

********************************************************************************
